KEGG   Alnus glutinosa (common alder): 133879900
Entry
133879900         CDS       T10577                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
aglu  Alnus glutinosa (common alder)
Pathway
aglu03018  RNA degradation
aglu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aglu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133879900
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133879900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aglu03019]
    133879900
   03041 Spliceosome [BR:aglu03041]
    133879900
Messenger RNA biogenesis [BR:aglu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133879900
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133879900
Spliceosome [BR:aglu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133879900
SSDB
Motif
Pfam: LSM Hfq DUF150_C
Other DBs
NCBI-GeneID: 133879900
NCBI-ProteinID: XP_062174697
LinkDB
Position
10:complement(28115024..28119180)
AA seq 100 aa
MSGSRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEATEFLRDADDPLK
TTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA
NT seq 303 nt   +upstreamnt  +downstreamnt
atgtcaggaagcaggaaggaaacagtcttggacctggcaaagtttgtggacaaaggtgtc
caagtgaagctcactggtggcagacaagtgacaggaactctaaaaggatatgatcagtta
ctaaaccttgttttggatgaagccacagagtttttgagagatgctgacgatccactgaag
actactgatcagaccaggcgcctaggccttatagtttgtaggggaactgctgtaatgctt
gtgtccccaacggatggaactgatgagattgccaaccctttcctccagccagatggggcc
tag

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