Alnus glutinosa (common alder): 133881539
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Entry
133881539 CDS
T10577
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133881539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aglu03041
]
133881539
Spliceosome [BR:
aglu03041
]
Complex A
U1 snRNP components
U1 related factors
133881539
Complex B
133881539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
133881539
NCBI-ProteinID:
XP_062176468
LinkDB
All DBs
Position
11:complement(22985165..23013967)
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AA seq
1028 aa
AA seq
DB search
MANNPRFSGAQPHQPPIVGSMEPPRTFLPPMSSQFRQVGPAQQSQQFNPVPSQHFYPVGR
GVPLMNVGLPPQSLQPQFSQPMQQFPPRAGQPGHATLPSQAIPLPIAQPNMHIISENLMP
QINAQTPNNYSPGLGGPERPLSSSYTFASSSYGQPQMNFNTSTHYQSTSQMHAPNISSGR
QLSLSSESQSTASAAQHIAEQPSVPAAIASAASIQHNSTREAPTDWIEHTSADGRRYYYN
KKTRLSSWEKPSELMTPLERADASTNWKEFTSPDGRKYYYNKVSKESKWSIPEELKLARE
QVEKSSFLGTQQETFGNPPVSYTVPPSVVEAPSGADTLSSPAQGIPSSPVSAGPDVAVSP
VLVSGSPASTVIASTKDEKADGVQTLVNVVTSLASVPESVEASVSIASTIPASMDDVDNL
SAQDIHSSADGIPAKVLEGVDAVKALEEVKTDEIGEKMTDSALVAKSIDPEPLIYANKLE
AKNAFKALLESTNVGSDWTWDRAMRVIINDRRYGALKTLGERKQAFTEFLSQRKKQEAEE
RRSKLKNAREEFKQMLEECTDLTSSTRWSKAVSVFENDERFKAVERDRDRRELFDNYLVE
LKNKERARADEERKRNIMEYRQFLESCDFIKADSQWRKLQDRLEADERCARLEKIDRLDV
FLEHIRDLEKEEEERRKIHKEELRKVERKNRDEFRKLMEEHVTAGILTAKTHWRDYCVKI
KDLPAYLAVASNTSGSTAKELFEDVLEELEKQYHEDKTRIKDAVKLGKILLSSTWTLEDF
KGSVLKDFNSPPVSDVNLKLVFDELLERVREKEEKEAKKRKRLADDFVHLLCSMKEITAS
SKWEDCKPQFEGSREFSSIGEESLCSEIFEQYIAQLKEQEKEHEQKRKEEKAKKEKERRK
VKQRRENEEGREREKDEQFKKDLADSKYADETELHAWKENKRSGEDNIKKQRKRHQSSED
IVDGNEKDRSRKSHGSTSDHKKSRRHASAPESDNESKHKRHKRDRRNGSRRYGEHGELED
GEFGEVVS
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcctcgattttcgggtgcacagcctcatcagcctcctatagtaggttca
atggaacctcctcgaactttccttccaccaatgtcttctcaattccgacaggtgggtccg
gcacagcagtcacagcagttcaatcctgtgccttctcaacatttttatcctgttggccga
ggcgttccgctaatgaatgttggattgcctcctcaatctctgcaaccccaattttctcaa
ccaatgcagcagtttcctccacgagctggtcagccaggacatgctacactaccatcacag
gcaattccattgccaattgctcagccaaacatgcacattatatctgaaaatttgatgcct
cagattaatgctcaaactccaaataactattcacctggtttgggtggcccagaaagacct
ctcagttcatcatatacttttgcatcatcttcttacggccaaccacaaatgaattttaat
acctccacccattatcagtctacatctcaaatgcatgcacccaatatttcttctgggaga
caacttagtttatcatctgaaagccagagcactgcctctgccgcacagcacattgctgaa
caaccttcagttcccgctgccattgcatcggcagcaagcatccagcataattccactaga
gaggccccaacagattggatagagcatacttctgctgatggaagaaggtactattataac
aagaaaacacgactatctagttgggagaagccctcagaattgatgacgccacttgagagg
gctgatgcatcaactaactggaaagaatttacaagtcctgatggaaggaagtactactac
aacaaggtttcgaaggaatccaaatggtcgatccccgaggagctgaagttggctcgcgag
caagtagaaaagtcatctttcttgggaacacagcaggaaacatttgggaatcctcctgtc
tcatatactgttcctccctccgtggttgaagcaccatctggtgcagataccttatcttcc
ccagctcaagggataccatcaagcccagtttcagcgggacctgatgttgctgttagccct
gtgttggtttctggatcacctgcttcaactgttatagcttctactaaagatgaaaaggca
gatggagtgcagacacttgtaaatgttgttacaagtttggcatctgtaccagaaagtgtt
gaagcctctgtatccatcgccagtaccattcctgcatccatggacgatgttgacaacctt
tcggctcaagatattcatagctctgcagatggaattcctgcaaaagtcttagagggagtt
gatgcggttaaagcgttggaggaagtcaagacagatgaaataggggagaaaatgaccgat
agtgcattggttgcaaaatcaattgatcctgaacccttgatatatgccaataagctggag
gctaaaaatgcattcaaagcacttttggagtctaccaatgttgggtctgactggacctgg
gatcgggcgatgagagtaataattaatgacagaaggtatggtgctctgaaaacacttgga
gagcggaagcaagccttcactgagttcttaagtcaaagaaaaaaacaggaagctgaggaa
aggcgcagtaaactgaaaaacgcacgggaagaatttaaacaaatgttagaagagtgcaca
gacctgacatcatccacaagatggagcaaagcagtgagtgtgtttgagaatgatgaacgt
tttaaagctgttgaacgagatagagatcgcagagaattgtttgataactacttggtggaa
ctcaaaaacaaggaacgagcaagggcagatgaggaacgcaagcggaatataatggaatac
aggcaattcttggaatcttgtgattttattaaggcagacagccaatggcgaaaacttcaa
gaccgcttagaagccgatgaaagatgtgcacgtcttgaaaaaattgatcgcttggatgtt
tttctggaacacatacgtgatttagagaaggaagaggaagagcggaggaagatacataag
gaagaattgagaaaggtggagcgtaaaaaccgtgacgagttccgcaaattgatggaagag
catgttactgcaggcattcttacagccaaaacccactggcgtgattattgtgtgaagatt
aaagatttacctgcatatttggcggttgcgtcaaacacttcaggttcaactgcaaaagag
ttgtttgaggatgttctcgaggagctagagaaacagtatcatgaagacaaaactcgaata
aaagatgcagtgaagctgggaaagatcctgctgtcatctacctggacgcttgaggacttt
aagggttctgttttgaaggattttaattctccaccagtatcagatgtcaacctaaagttg
gtatttgatgagttacttgagcgagttagggagaaggaagagaaagaagcaaaaaagcgt
aaacgccttgcggatgactttgttcatctactttgttcaatgaaggaaataactgcatca
tcaaagtgggaggactgcaaaccacagtttgaagggagtcgagagttcagttcgatagga
gaagagagcctttgcagtgaaatatttgagcaatatatagcacaactaaaggaacaggaa
aaagaacacgagcaaaaacggaaggaggaaaaggcaaagaaggaaaaagagaggagaaag
gtcaagcagagaagggaaaacgaggaaggacgtgaaagagaaaaagatgagcaatttaaa
aaggatttagcagacagtaaatatgctgatgaaacagaacttcatgcctggaaagagaac
aaaagatcgggagaagacaatattaagaagcaaaggaagcggcatcaaagttctgaggat
attgtagatggaaatgagaaagatcgttctaggaaatcccatggatctaccagtgaccac
aagaaatcgagacgtcatgcatctgctcctgaatcagataatgaaagcaagcataaaaga
cataagagagaccgccgaaatggttctcgtagatatggagaacatggcgaacttgaagat
ggggaatttggtgaggttgttagttga
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