Alnus glutinosa (common alder): 133881664
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Entry
133881664 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03018
RNA degradation
Brite
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133881664
Messenger RNA biogenesis [BR:
aglu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133881664
Spliceosome [BR:
aglu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133881664
Complex C
U4/U6.U5 tri-SnRNP related factors
133881664
Ribosome biogenesis [BR:
aglu03009
]
Eukaryotic type
Pre-60S particles
Helicases
133881664
Transfer RNA biogenesis [BR:
aglu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133881664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
133881664
NCBI-ProteinID:
XP_062176639
LinkDB
All DBs
Position
11:complement(10558785..10592769)
Genome browser
AA seq
999 aa
AA seq
DB search
MEALTGSSKRRSAQDPPGDPLLPHKRHQRDNDSPLALGEELLDCLHDVSHPEGYVAPPPR
SPSSSAAPPAKVFEFTLDPFQSEAIKCLESGESVMVSAHTSAGKTVVALYAIAMSLQNKQ
RVIYTSPIKALSNQKYREFKQEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIT
REVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQP
CHIVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPASEGDKKKENG
KWQKGLPMGRVGEESDIFKMVKMIIQRQYDPVILFSFSKRECELLAMQMAKLDLNGDDEK
ANIETIFWSAMDILSDDDKKLPQVSNILPLLKRGVGVHHSGLLPILKEVIEILFQEGLIK
CLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDKRGICIL
MVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMILNQMRCEDGDPENLLRNSFYQFQADRA
IPSFEKQIKDLEEERDSIIIEEEDSLKNYYDLLQQYKSLKKDVRDIIFSPKYCLPFLQAG
RLVCIQCTRTEEVSPSFSIEDQVTWGVILNFQRVKSASEDDASRKPEDADYTVDVLTRCV
VSKDGIAKKTIKIVQLKEPGEPLVVSIPISQIINLSSNRMVIPKDLLPLEIRENTLKKVS
EGLSRFPEKGSHLLNPEEDFKIQSSSYKKAARRIEALESLFDKHEVAKSPLIEQKLKAFH
MKQELTAKIKLLKKTVRSSTTLAFKDEFKARKRVLRRLGYVTNDDVVELKGRVACEISSA
DELTLTELMFNGVLKEITVEEMVSLLSCFVWQEKLKNATKPREQLDLLFAQLQDTARKVA
KVQLECKVQIDVENFVNSFRPDIMEAVYAWAKGSKFYEIMEITEVFEGSLIRAIRRLEEV
LQQLVLAANSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggaagctcttacaggatcgtcgaagaggaggtcggcacaggacccaccgggagaccct
ctgcttccgcacaaacgtcaccagagagataacgattccccgctggccctgggcgaagag
ctcctggactgtttgcacgacgtgtcgcacccggagggctatgttgctcctcctcctcgc
tctccctcctcttctgcggcgccgcctgccaaagtattcgaattcaccctcgaccctttc
cagtccgaagccatcaagtgcctcgaaagcggcgagtccgtcatggtgtctgcccatact
tcagctgggaaaactgttgtggcattgtatgctattgctatgtcattgcaaaataagcaa
cgggtcatatacacttctccaatcaaagctctcagtaaccaaaaatatagggagttcaaa
caagagttttcagatgttggcttgatgaccggtgatgtgacgattgagcccaacgcttct
tgcttggtgatgacaacagaaatatggcgtagtatgcagtacaaaggatcagagattaca
cgggaggtcgcttggattatttttgatgaggtgcattacatgcgtgaccgggaaagaggt
gtagtgtgggaagagagcattgttatggcgccaaaaaactctagattcgtattcctctct
gcaaccgtgcctaatgcaaaggaatttgctgattgggttgcaaaggttcaccaacaacct
tgtcacattgtttatactgattataggccaacgcctcttcagcattatattttcccttcg
ggaggtgatggtctatacttggtggtggatgaaaaaggaaaatttcgtgaggatagcttt
cagaaatctttaaatgcacttgttcctgctagtgagggtgacaagaaaaaagagaatggg
aagtggcaaaagggtttgcctatgggcagagttggtgaagaaagtgacatcttcaagatg
gtaaaaatgatcattcagcgtcaatatgatcctgtcatacttttcagctttagcaaaagg
gaatgtgaacttcttgcgatgcagatggcaaaattggatctgaacggggatgatgagaaa
gcaaatatagaaactatcttctggagtgctatggatattctttcagatgatgataagaag
ttacctcaggtttcaaatattttacctctcttgaaacgtggagtaggtgtacatcattct
ggtttgcttcccattttgaaggaagttattgagatactatttcaagaagggttgatcaag
tgtttgtttgccacagagaccttcagcataggtttgaatatgcctgcgaaaactgttgta
tttacaaatgtccgtaaatttgatggggataagttcagatggatatccagtggagagtat
atacagatgagtgggcgtgctggtcgtcgaggtattgataaacgtggaatatgcatcctt
atggtagatgagaaactggaaccttctactgctaaaatgatgcttaaaggaaatgctgat
tgtttgaacagtgccttccatttaagttacaacatgattttgaatcaaatgcgctgtgaa
gatggagatcctgagaatttgctccgtaattcattctatcaattccaagccgaccgtgcc
attcctagttttgagaaacaaataaaggatcttgaagaagagagggattctattataatt
gaagaagaagatagtttgaagaattattatgatctgctacagcagtacaagagcttgaag
aaggatgttcgtgatattatattttctccaaagtactgcttacctttccttcaggctgga
aggcttgtgtgtattcaatgcactaggacagaagaagtttccccatctttctctatcgag
gaccaggtcacatggggagtgatattaaattttcaaagagtgaaaagtgcatctgaagat
gatgcaagtagaaagcccgaagacgcagactacacagtggatgttcttacaagatgcgta
gtgagcaaggatggaattgccaagaaaaccattaagattgttcaattgaaagaacctgga
gaacctcttgttgtttctatccccatctctcagattattaatttaagtagtaatcggatg
gtcataccaaaggatcttttgcctttggaaattcgagaaaacacattgaagaaggtttct
gaaggactttctagatttcctgaaaaagggtcacaccttctaaatccagaagaagatttc
aagattcaaagtagctcatacaaaaaagcagctcgtagaatagaggctctagagagcctt
tttgacaagcatgaagttgctaaatctccccttattgagcaaaagctcaaagcttttcac
atgaagcaagaattgacagccaagatcaagttgcttaagaagacagtacgatcttccact
acattggcttttaaagatgaattcaaggcaagaaaaagggttcttcggaggctaggatat
gtcacaaatgacgatgttgtggagttgaaggggagagttgcttgtgaaatcagtagtgca
gacgagttgaccctgacagagctaatgttcaatggggttttaaaggagataacggtggaa
gagatggtgtctctactttcttgttttgtctggcaggagaaacttaaaaatgctacaaag
cctagggaacaacttgacttgctctttgcacagctacaagatacagctcgaaaggttgcc
aaagttcagctagagtgcaaggtccaaattgatgttgagaactttgtgaattcatttcgg
ccggatatcatggaagctgtgtatgcttgggcgaaaggatcgaaattctatgagataatg
gaaatcacagaggtttttgagggcagcttgatcagggcaattcgtagactggaggaagtt
cttcagcagctcgtactagcagcaaattccattggggaaactgagcttgagtcaaaattt
gaagaggctgtttccaagatcaagcgagatattgtgtttgcagcgtctctgtatttgtag
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