Alnus glutinosa (common alder): 133882363
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Entry
133882363 CDS
T10577
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133882363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133882363
03036 Chromosome and associated proteins [BR:
aglu03036
]
133882363
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133882363
Coactivators
SAGA/TFTC/STAGA complex
133882363
Chromosome and associated proteins [BR:
aglu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133882363
STAGA complex
133882363
TFTC complex
133882363
SAGA complex
133882363
SLIK complex
133882363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
133882363
NCBI-ProteinID:
XP_062177495
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All DBs
Position
11:800514..808611
Genome browser
AA seq
543 aa
AA seq
DB search
MSVVPKEAIEVVAQSIGITNLSPDVALALAPDVEYRVREIMQEAIKCMRHSRRTSLTSDD
VDSALKLRNVDPIYGFTSGDSLRFKRAAGHKDLFYIDDKDVELKTVIEAPLPKAPLDTSV
TAHWLAIEGVQPAIPENAPVEALAVPSDGKKSENTEDRLPIDLKLPVKHVLSRELQLYYE
KIKELTVNKSGSVLFKQALVSLATDSGLHPLVPYFTYFVADEVTRNLNNFPLLFALMRVV
RRLLQNPHIHIEPYLQQLMPSVITCLVAKRLGNRSSDNHWELRNFTANLVASICKSFFRY
GHVYHNLQPRVTRTLLHAFLDPTKALPQHFGAIQGLAALGPNVVRLLILPNLEPYLQLLA
PEMLLEKQKNEMKRLEAWRVYGALLFAAGQCMYDRLKMFRSLFFPPTRAIWKINGKVATT
MLNKRKASTDNLMQQPPHKKIATDGTMGVIPTNSIQTDRQGAAGGYSTAVGGSNVGLSSM
SRPLPTENMSGKEVGGRVAKASTVVSQAWKEDMDAGHLLASSSEFFGESLYSFAPKPELS
FFL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgtgccaaaggaggcaattgaggtcgttgcacagagcattggaatcacaaat
ttgtccccagatgttgctctcgctcttgctcctgacgtcgagtaccgggtccgcgagatc
atgcaggaggcaattaaatgcatgcgccactcgaggcggactagtctgacatccgatgat
gtggatagtgctcttaagttaagaaatgtggatccaatatatggctttacatctggagat
tccctgaggttcaaaagggctgctggacacaaggatttattctatattgatgacaaggat
gtggaacttaaaaccgtgattgaagcacctttgcctaaagcaccacttgatacatcagtt
actgctcactggctggcaattgaaggtgttcagcctgcaattccagaaaatgctccagtt
gaagcacttgcagtgccatctgatggcaaaaaatctgagaacacagaagatagacttccc
attgaccttaaattacctgttaagcatgttctatccagggagcttcagctatattatgaa
aaaatcaaagagttgactgtgaataagtctggttccgtcctcttcaaacaagcattagtg
agcttggcaacagattcaggactgcatcccttagttccttacttcacatacttcgtcgct
gatgaggttacacgtaatttaaataatttccctctcctatttgctttgatgcgtgttgtt
cgaaggcttcttcaaaatccacacattcatatcgaaccttatctacaacaattgatgcca
tctgttattacatgccttgtcgcaaaaagattagggaatagatcttctgacaatcattgg
gagcttaggaacttcacagcaaacctagttgcttcaatatgcaaaagctttttcagatat
gggcatgtttatcacaatcttcagccacgtgtcacaaggactctgcttcatgcattctta
gacccgaccaaagcattgcctcaacattttggtgctattcagggactagcagcccttgga
cccaatgtggttcgtctgctcatattaccaaatcttgagccatatttgcaactgttggca
ccagaaatgctacttgagaagcaaaagaacgaaatgaagaggcttgaagcttggcgtgtt
tatggggccttgctgtttgcggctggccaatgcatgtacgatcggctcaagatgttccgc
agtttgttctttccaccaactcgtgccatctggaagatcaatggaaaagttgcaactacc
atgctaaataaacgcaaggcgagcacggacaacttgatgcagcaaccaccacacaaaaaa
atagcaacagacggcacaatgggtgtaataccaacgaactccattcaaactgacaggcaa
ggggctgcaggtgggtattcaactgctgtagggggctccaatgttggtttatcatcaatg
tcacggccgttaccaactgaaaacatgtctggaaaggaggttggtggtagagtggcaaaa
gcgtccactgttgtctctcaggcttggaaggaggacatggatgcaggacatttgttggca
tcttcgtctgaattttttggtgaaagtttgtactcctttgccccaaaacctgagttgtcc
ttcttcttgtga
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