Agromyces badenianii: DCE93_03420
Help
Entry
DCE93_03420 CDS
T05411
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agm
Agromyces badenianii
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agm03019
]
DCE93_03420 (hrpA)
Enzymes [BR:
agm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DCE93_03420 (hrpA)
Messenger RNA biogenesis [BR:
agm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DCE93_03420 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND_NTPase5
AAA_30
T2SSE
ResIII
nSTAND3
WHD_HA2
SLFN-g3_helicase
UvrD-helicase
NACHT
PhoH
AAA_11
AAA_16
FtsK_SpoIIIE
Zeta_toxin
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AWB94825
UniProt:
A0A2S0WU06
LinkDB
All DBs
Position
complement(708332..712348)
Genome browser
AA seq
1338 aa
AA seq
DB search
MPDAITYPAELPVSRQREEIARAIRENQVVIVAGATGSGKTTQLPKICLELGRESIGHTQ
PRRLAARTIAERIAEELGEEVGGLVGYQVRFTDKATASTRIKLMTDGILLNEMHHDRMLR
RYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIVTSATIDPESFARHFADATGAPA
PIIEVSGRTYPVEIRYRPLVAEESASDDPDEPTGSAAGGRAAADDKDYLQGIIEALDELD
RESRGDVLVFLSGENEIRDAEEAVRGHYAGRGASVTEVLPLYGRLSAADQHRVFQPSKVA
GVRRRVVLATNVAETSLTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSG
RSGRTSDGIAIRLYSEDDFARRPEFTEPEVLRTNLAAVILQMISLGLGDIEAFPFLTPPD
ARGVKDGVELLRELGAVDAAAGAAAGNRLTRVGRALAKLPIEPRFGRMVVESKQHGVSRE
VLAIVAGLTIQDPRERPLERRQQADERHARFVDPTSDFITLLNLWNHLETQQRELGSSAF
RRMCKNEFLNYLRVREWNDVYRQLRQMARPLGLTVDDQAPGGGTAPDADRIHKSLLAGLL
SHIGLKDAPASSQQPAARGGSGASGGRKPKGEYLGARQSRFLIFPGSALAKKQPDAIMSA
ELVETSRLFARMNAAIDPAWAEPLAGSLVKRSHSEPHWEKRQGSAVAYEKVTLYGVPIVA
RRRIQLARIDQAYARELFIRHALVDGDWPNDIRRDRLFDFDRRNRALRAELEAVEERSRR
RDILFDDEAVFEFYDARIPADVTSTRLFETWWRATKQQSPELLTMTAEALSPEDAPGIDE
DAFPPSWQQDDQTLALRYRFEPGAADDGVTVQVPLVLLARLRPEGFDRQVPGLRTELVTA
MIKALPKVIRRNVVPAADWAAKIVAELGESDAPAGASFADEVAAVIKRLTHTPVTGADFA
MDRIPPHLQMSFRVVDGRGKQLAVGKDLRSLQAQLADRARDAVADTFAKPARGERGPRGP
RSVDAAGAPTPGAVAASGERPGAGIERSGLTSWDFAELPRFVDTTVGGNRVRAYPALIDD
GTAVSIRLLATPEEQARAMPGGIRRLLMLATPSPVNYVQQHLTGNEKLILATSPYPSTTA
LFADCLVACINDVLYRVAADGMLFTKLEFDTVRDRVSGVVMDTMFETVGLVARTLTALRA
AEKAVKSATSMALLPALSDAKEQIAGLVFPGFVSRTGLERLRHVPRYLEGVTMRVGKLVD
NPGRDRVWMNEVQTALSRFADAGGTIPLAPDAPANLVRARWLIEELRISLFAQELRAAES
VSLQRITKLLAQPTASIG
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgacgcgatcacctaccccgccgagctgccggtctcccggcagcgagaggagatc
gcgcgcgccatccgcgagaaccaggtcgtgatcgtcgccggggcgacgggctccggcaag
accacgcagctgccgaagatctgcctcgagctcggccgggagtccatcggccacacccag
ccgcggcggctcgccgcacgcacgatcgccgagcgcatcgccgaggaactcggcgaggag
gtcggcgggctcgtcggctaccaggtgcgcttcaccgacaaggccacggcgtcgacgcgc
atcaagctgatgaccgacggcatcctgctgaacgagatgcaccacgaccggatgctgcgt
cggtacgacacgatcatcatcgacgaggcgcacgaacgcagcctcaacatcgacttcctc
ctcggctacctcaagcagctgctgccgaagcgccccgacctcaaggtcatcgtcacgagt
gcgacgatcgaccccgagagcttcgcgcggcacttcgcggatgccaccggcgcgccggcc
ccgatcatcgaggtctcggggcgcacctacccggtcgagatccggtaccgaccgctcgtc
gcggaggaatcggcgagcgacgatccagatgagccgaccggatcggccgcgggcggccgg
gccgcggccgacgacaaggactacctgcagggcatcatcgaggcgctcgacgaactcgac
cgcgagtcccgcggcgacgtgctcgtcttcctctcgggcgagaacgagatccgcgacgcc
gaagaggcggtgcgcggccactacgccggccgcggggcatccgtcaccgaggtgctgccc
ctctacggccgcctctcggcagccgatcagcaccgggtgttccagccgtcgaaggtggcc
ggcgtgcgccgccgcgtcgtgctcgcgacgaacgtcgccgagacgagcctcacggtgccg
ggcatcaagtacgtgatcgatgcgggcaccgcgcgcatcagccgctactcggtgcgatcg
aaggtgcagcggctgccgatcgaggcgatctcgcaggcctcggcgaaccagcgctccggt
cgctcgggccgcacgagcgacggcatcgcgatccgcctctactccgaagacgacttcgcc
cggcgccccgagttcaccgagcccgaggtgctgcgcaccaacctcgccgccgtcatcctg
cagatgatctccctcggtctcggcgacatcgaggcgttcccgttcctcacgccgcctgac
gcgcgcggcgtgaaggacggcgtcgagctgctgcgcgaactcggcgccgtcgacgctgct
gcgggcgcagcagccggcaaccgcttgacgagagtcgggcgggcgctcgcgaaactgccg
atcgaaccccgattcggccgcatggtcgtcgagtcgaagcagcacggcgtcagccgggag
gtgctcgcgatcgtcgcggggctcacgatccaggatccgcgcgagcgaccgctcgagcga
cgccagcaggccgacgagcggcatgcccgtttcgtcgacccgacgagcgacttcatcacg
ctcctgaacctctggaaccacctcgagacgcagcagcgcgaactcggctcgagcgcattc
cggcgcatgtgcaagaacgagttcctgaactacctgcgcgtgcgcgagtggaacgacgtg
taccgccagctgcggcagatggcgcggccgctcggcctcacggtcgacgaccaggcgccc
ggcggcgggaccgcgcccgatgccgaccgcatccacaaatcgctcctcgcgggcctgctc
agccacatcggcctgaaggacgccccggcgagctcgcaacagccggccgcacgcggcggc
agcggggcatccggcggccggaagcccaagggcgagtacctcggcgcccggcagtcccga
ttcctgatcttccccggctctgcgctcgcgaagaagcagcccgacgcgatcatgagcgcc
gagctcgtcgagacgagtcgcctcttcgcccgcatgaacgccgcgatcgacccggcctgg
gcggaaccgctcgccggatccctcgtcaagcgcagccacagcgagccccactgggagaag
cggcagggctccgccgtcgcctacgagaaggtcacgctctacggcgtgccgatcgtcgcc
cgtcggcgcatccagctcgcccgcatcgaccaggcgtacgcccgcgagctcttcatccgg
cacgcgctcgtcgacggcgactggccgaacgacatccgccgcgaccggctcttcgacttc
gaccgcaggaaccgcgcgctccgcgccgagctcgaggcggtcgaggagcggagccggcga
cgcgacatcctcttcgacgacgaggccgtcttcgagttctacgatgcgcgcatcccggcc
gacgtcacctcgacccggctcttcgagacctggtggcgggcgacgaagcagcagtcgccc
gaactgctcacgatgaccgccgaggcgctcagtcccgaggacgcccccgggatcgacgag
gacgccttcccgccgagctggcagcaggacgaccagacgctcgcgctgcgctaccgcttc
gagcccggcgcagccgacgacggcgtcacggtgcaggtgccgctcgtgctgctcgcgcgg
ctccgcccggaggggttcgaccggcaggtgccgggcctgcgcaccgaactcgtcaccgcg
atgatcaaggccctgccgaaggtgatccggcgtaacgtcgttcccgcggcggactgggcc
gcgaagatcgtggccgagctgggcgagtcggatgccccggcgggagcgtcgttcgccgac
gaggtcgccgccgtcatcaagcgcctgacgcacacccccgtgacgggcgccgacttcgcg
atggatcggatcccgccgcacctgcagatgtcgttccgtgtcgtcgacggccgcggcaag
cagctcgcggtgggcaaggacctgcggtcgctgcaggcacagctcgccgatcgggcgcgc
gacgccgtcgccgacaccttcgcgaagcccgcccgcggcgagcgcggaccccgcggcccg
cggtcggtcgacgccgcgggagctcccacccccggcgcggtcgccgcgtcgggcgaacgc
ccaggggccggcatcgagcgcagcgggctcacgagctgggacttcgccgagctgccgcgc
ttcgtcgacacgaccgtcggcggcaaccgggtgcgcgcctaccccgcgctcatcgacgac
ggcacggccgtgagcatcaggctgctcgcgacccccgaggagcaggcgcgggcgatgccc
gggggcatccgtcgcctgctcatgctcgcaacgccctcgcccgtcaactacgtgcagcag
cacctgaccggcaatgagaagctcatcctcgcgacgagcccgtacccgagcacgacggct
ctcttcgccgactgcctggtggcctgcatcaacgacgtgctctaccgcgtcgccgccgac
ggcatgctcttcacgaagctggagttcgacaccgttcgcgaccgtgtctcgggcgtcgtg
atggacacgatgttcgagaccgtcggcctcgtggcccgcacgctcaccgcgttgcgggcg
gcagagaaggcggtcaagtcggcgacgagcatggccctgctgcccgcgctcagcgacgcg
aaggagcagatcgccgggctcgtcttccccggcttcgtctcgcgaaccggcctcgagcga
ctgcggcacgtgccgcgctacctcgagggcgtcacaatgcgcgtgggcaagctcgtcgac
aacccggggcgcgaccgggtgtggatgaacgaggtgcagacggcgctctcgcggttcgcc
gatgcgggcggcacgattccgctggcaccggatgccccggcgaacctcgttcgcgcgcgc
tggctgatcgaggagctgcgcatcagcctcttcgcccaagagctgcgcgccgcagagagc
gtgtcgctgcagcgcatcacgaagcttctcgcgcagccgaccgcctcgataggctga
DBGET
integrated database retrieval system
