Agromyces badenianii: DCE93_03975
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Entry
DCE93_03975 CDS
T05411
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
agm
Agromyces badenianii
Pathway
agm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DCE93_03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agm03400
]
DCE93_03975
Enzymes [BR:
agm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DCE93_03975
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DCE93_03975
DNA repair and recombination proteins [BR:
agm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DCE93_03975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
TniQ
DNA_ligase_A_N
Zn_ribbon_TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AWB94920
UniProt:
A0A2S0WUE9
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All DBs
Position
822192..823052
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AA seq
286 aa
AA seq
DB search
MPELPEVHALAAFLDERVAGHAFASLRVAAISALKTFDPPLSALEGQRIERVLRHGKFID
FDAGEVHLIFHLARAGWLRWYNEVPATPVKPGRSPLALRARLDDGSGFDLTEAGTKKSLA
VYVVRDPAEVPGIARLGPDPTAPDFTLADFAGILDGRRTQIKGVLRDQSVFAGIGNAYSD
EILHAAKMSPYALAAKLTPEQVERLYGALRDTLAEAVAEASGRPPAELKDAKRRAMRVHG
RTGETCEVCGDTIRQVIFADSTFQYCPTCQTGGKPLADRVLSRLVK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagcttcccgaagtgcacgcgctcgccgcgttcctcgatgagcgcgtggcaggg
catgccttcgcctcgctgcgggtcgcggcgatctcggcgctcaagaccttcgatccgccg
ctgtcggcgctcgagggccagcgcatcgaacgggtgctgcgccacggcaagttcatcgac
ttcgacgccggcgaggtgcacctgatcttccatctcgcgcgggcggggtggctgcgatgg
tacaacgaggtgccggcgacgccggtgaagcccggccggtcgccactcgccctgcgcgcg
cggctcgacgacggttcgggattcgacctgaccgaggccggcacgaagaaatcgctcgcc
gtgtacgtcgttcgcgacccagccgaggttccgggcatcgcgaggctcgggcccgacccc
acggcgcccgatttcaccctcgccgacttcgctggcatcctcgacgggcgccgcacgcag
atcaagggggtgctgcgcgatcagtccgtgttcgcgggcatcggcaacgcgtactccgac
gagatcctgcacgccgcgaagatgtcgccctacgccctcgcggcgaagctcactcccgag
caggtcgaacgactgtacggcgcgctccgcgacaccctcgccgaggcggttgccgaggca
tccggtcgcccgcccgccgagctcaaagacgccaagcgccgggcgatgcgcgtgcacggg
cgcaccggcgagacctgcgaggtgtgcggcgacacgattcgccaggtcatcttcgcggac
tccaccttccagtactgccccacctgccagaccggcggcaagccgctcgccgaccgagtg
ctctcacgactcgtgaagtag
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