Agromyces badenianii: DCE93_11605
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Entry
DCE93_11605 CDS
T05411
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agm
Agromyces badenianii
Pathway
agm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCE93_11605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agm03021
]
DCE93_11605 (rpoC)
03400 DNA repair and recombination proteins [BR:
agm03400
]
DCE93_11605 (rpoC)
Enzymes [BR:
agm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCE93_11605 (rpoC)
Transcription machinery [BR:
agm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCE93_11605 (rpoC)
DNA repair and recombination proteins [BR:
agm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCE93_11605 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
HmpF
Motif
Other DBs
NCBI-ProteinID:
AWB96217
UniProt:
A0A2S0WXY2
LinkDB
All DBs
Position
complement(2441353..2445249)
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDDEGRHADMPGLENELRLEIKTIGDQRDARIAELMKRKESE
LEQLEAEGAKSDQKKRAEAAADKEMTQVRKSGDEQIAHLERVWEDFRTLKVGDLKPEDSV
FHELQDRFGMYFDAYMGAEAIKKRLEAFDLAAEAEDLRLQIAEGKGQKKIRAIKRLRVVS
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTGKPGAAGEGR
AFSSIAEAILAFDQNRPGEIALDLGATVKIRLEGLHFAEGETPENFVPGKPYLLETTLGR
ALFNEALPVDYPYVNAQAGKSQISEIVNDLAERYPKTEVAATLDRIKDAGFRWATRSGVT
VALSDILTPPNKGEIVSKYEKQAAKVQGQFEKGLTTDLERRQELIQIWTKATDEVAKAMQ
ENFPTDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYF
IATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELPIATTDASGAL
VRDPNVENAVYARSLAADAVSAKGEVVAEGGSDVGDVLINELIAAGVETIKVRSVLTCES
AVGVCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGL
PRVQELFEARTPKGASPIVEAPGRITIDETDKQRKVILTPDNGDEPIAYNVLKRSTLLVE
DGQHVELGQQLIVGTVDPKEVLRVKGVREVQKHLVNGVQDVYRSQGVPIHDKHIEVIVRQ
MLRKVTVVDHGDTDLLPGELVDRLKYNDINRTALTEGKKTASARQEVMGITKASLATESW
LSAASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLGKYRNVAVEATEEAKA
ERYPNRIFTDDAAFTEGDLSFVDFDAFSSDDFTPGNYS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacgacttttgacgagcttcgcatcggcctggccaccgcagaggacatc
cgcaagtggtcctacggtgaggtcaagaagcccgaaaccatcaactaccgcaccctgaag
cccgagaaggacggtctgttcggtgagcagatcttcggcccgagccgcgactgggagtgc
gcctgcggcaagtacaagcgggtgcgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtccgccgtgagcgcatgggccacatcgagctcgccgcgccg
gtcacgcacatctggtacttcaagggtgtgccgagccgtctcggctacctgctcgacatg
gcgccgaaagacctcgagaaggtcatctacttcgccgcgtacatggtcatcgacgtcgac
gacgagggtcgtcacgccgacatgcccggcctcgagaacgagctccggctcgagatcaag
accatcggcgaccagcgcgacgcccgcatcgccgagctcatgaagcgcaaggagtccgag
ctcgagcagctcgaggccgaaggcgccaagagcgaccagaagaagcgcgcagaggccgca
gccgacaaggagatgacgcaggtccgcaagtcgggagacgagcagatcgcgcacctcgag
cgcgtgtgggaggacttccgcaccctcaaggtcggcgacctcaagcccgaggactcggtg
ttccacgagctccaagaccgcttcggcatgtacttcgacgcctacatgggcgccgaggcc
atcaagaagcgcctcgaggccttcgacctggccgccgaggcggaagacctgcgcctgcag
atcgccgagggcaagggccagaagaagatccgcgcgatcaagcgcctgcgcgtcgtcagc
tccttcctgcagaccggcaactcgccggccgcgatggtgctcgacgtcgtgccggtcatc
ccgcccgagctccgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtcttcgtcgtctgctcgacctc
ggtgctcctgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgca
ctgttcgacaacggccgtcgcggtcgtcccgtcaccggcaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctcttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgccaagcgcatggtcgagcgttcgcgt
ccgcaggtctgggacgtgctcgaggagatcatccgcgagcgcccggtgctgctgaaccgt
gcaccgacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcgatccagctccacccgctcgtgtgtgctgcgttcaacgcggacttcgacggcgaccag
atggccgtgcaccttcccctctcggtggaggcgcaggccgaggcccgcatcctgatgctc
gcctcgaacaacatcctgaagccgtccgacggccgcccggtgaccctgcccacgcaggac
atgatcatcggcctgcaccacctgacgacgggcaagcccggcgcagcgggtgagggtcgt
gcattctcgtcgatcgccgaggccatcctcgcgttcgaccagaaccgtccgggcgagatc
gcgctcgacctcggtgccacggtgaagatccgcctcgaggggctgcacttcgccgagggc
gagacccccgagaacttcgtgccgggcaagccctacctgctcgagacgaccctcgggcgt
gcgctcttcaacgaggcgctgccggtggactacccctacgtgaacgcgcaggcgggcaag
tcgcagatctccgagatcgtcaacgacctcgccgagcgctacccgaagaccgaggtcgcc
gcgaccctcgaccggatcaaggacgccggcttccgctgggcgacccgttcgggcgtgacc
gtcgcgctctccgacatcctgacgccgcccaacaagggcgagatcgtctcgaagtacgag
aagcaggccgccaaggtccagggccagttcgagaagggtctgaccaccgacctcgagcgt
cgccaggagctcatccagatctggaccaaggccaccgacgaggtcgccaaggccatgcag
gagaacttcccgaccgacaacaccatcaaccgcatggtgacgtcgggcgctcgtggtaac
tggctgcaggtgcgcaacatcgccggcatgcgaggcctcgtgaacaacccgaagggtgag
atcatccctcgcccgatcatctcgagctaccgcgagggcctctcggtcgccgagtacttc
atcgcgacccacggtgcccgcaagggtctggccgacacggccctccgtacggccgactcg
ggctacctcacgcgtcgtctcgtcgacgtctcgcaagatgtgatcatccgcgaagacgac
tgcggcacgaccaagggactcgagctgccgatcgcgacgacggatgcctcgggggcgctc
gtgcgcgacccgaacgtcgagaacgcggtctacgcccgcagcctcgccgccgacgcggtc
agcgccaagggcgaggtcgtggccgagggcggctccgacgtcggcgacgtgctcatcaac
gagctcatcgccgcgggcgtcgagacgatcaaggtgcgctccgtgctcacctgcgagtcc
gccgtcggtgtctgcgcgaagtgctacggccgttcgctcgcgaccggcaagctcgtcgac
atcggcgaggccgtcggcatcatcgcggcccagtcgatcggtgagcccggcacgcagctg
acgatgcgtaccttccacaccggtggttcggcctcggccgacgacatcacgcagggtctg
ccccgcgtgcaggagctcttcgaggcgcgtacccccaagggtgcgtcgcccatcgtcgag
gccccgggtcgcatcacgatcgacgagaccgacaagcagcgcaaggtcatcctcacgccc
gacaacggcgacgagccgatcgcgtacaacgtgctcaagcgttcgaccctcctggtcgaa
gacggacagcacgtcgagctcggccagcagctgatcgtcggcaccgtcgacccgaaggag
gtcctccgggtcaagggtgtgcgcgaagtgcagaagcacctcgtcaacggcgtgcaggac
gtctaccgttcgcagggtgtgccgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgcaaggtcaccgtcgtcgaccacggcgacaccgacctgctgcccggtgagctc
gtcgaccgcctgaagtacaacgacatcaaccgcactgcgctgaccgagggcaagaagacc
gcctcggcccgccaggaggtcatgggtatcaccaaggcctcgctcgcgaccgagtcgtgg
ctgtcggccgcgtcgttccaggagacgacccgcgtgctcacgcaggccgccatggagggc
aagtccgacccgctcgtcgggctcaaggagaacgtcatcatcggaaagctcatcccggcg
ggtaccggcctcggcaagtaccgcaacgtcgctgtggaggcaacggaggaggcgaaggcg
gagcgctacccgaaccgcatcttcaccgacgacgcggcgttcaccgagggagacctgagc
ttcgtcgacttcgacgcgttctcgagcgacgacttcacccccggcaactacagctag
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