KEGG   Agromyces badenianii: DCE93_12595
Entry
DCE93_12595       CDS       T05411                                 
Name
(GenBank) RNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
agm  Agromyces badenianii
Brite
KEGG Orthology (KO) [BR:agm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:agm03016]
    DCE93_12595
Enzymes [BR:agm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     DCE93_12595
Transfer RNA biogenesis [BR:agm03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    DCE93_12595
 Prokaryotic type
   tRNA splicing ligases
    DCE93_12595
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AWB96383
UniProt: A0A2S0WYE9
LinkDB
Position
complement(2665258..2666424)
AA seq 388 aa
METITKRLVSWASLIDEKTVEQARTSSTMPFIYPHLALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVKTQFAGSALPADRRAVREQIERAIPLSAGKVNRKIVATAEPRIA
ELEELAEAKGFDPAAYAGNWREQLGSLGSGNHFIEVSVDETDRVWLFLHSGSRGVGNKIA
QHHIKVAQRFAKQWWIELPDPDLAYLVEGTPEFTRYIAELRWAQHFALLNREEMMDRVIR
QVSEWVGTAVEEQERINCHHNFTESEMHFGKRVWVSRKGAIQADAGRPGLIPGSMGTASY
VVEGLGHPMSLNSSPHGAGRSFSRTKARQSFTHEQLREAMVGIEFRDTDAFIDEIPQAYK
PIDRVMADAASLVTVRHTLRQLVNVKGD
NT seq 1167 nt   +upstreamnt  +downstreamnt
atggagaccatcacgaagcggctcgtctcgtgggcgagcctgatcgacgagaagaccgtc
gagcaggcccgcacctcgtcgacgatgccgttcatctacccgcatctcgcgctcatgccc
gatgcccacctcgggctcggcgccacggtcgggtcggtcatcccgacgctcggggcgatc
atccccgcggccgtcggggtcgacatcggctgcggcatgatcgcggtcaagactcagttc
gccggctccgcgctgcccgccgaccggcgggcggtgcgggagcagatcgagcgcgccatc
ccgctctcggcgggcaaggtcaaccgcaagatcgtcgcgaccgccgagccgcgcatcgcg
gagctcgaggagctcgccgaggcgaagggcttcgacccggccgcgtacgcgggcaactgg
cgcgagcagctcggttcgctcggcagcggcaaccacttcatcgaggtgtcggtcgacgag
accgaccgggtgtggctcttcctgcactcgggcagccggggcgtcggcaacaagatcgcc
cagcaccacatcaaggtcgcccagcgcttcgcgaagcagtggtggatcgagctgcccgac
cccgacctcgcgtacctcgtcgagggcacgcccgagttcacccggtacatcgccgagctc
cggtgggcgcagcacttcgccctcctcaaccgggaggagatgatggaccgcgtcatccgc
caggtgagcgagtgggtcggcacggcggtcgaggagcaggagcgcatcaactgccaccac
aacttcaccgagagcgagatgcacttcggcaagcgcgtgtgggtctcccgcaagggggcg
atccaggcggatgccggtcggcccgggttgatccccggctcgatgggcaccgcgtcgtac
gtggtcgaggggctcgggcatccgatgtcgctgaactcctcgccgcacggtgccgggcgt
tcgttctcgcgaacgaaggccaggcagagcttcacgcacgagcagttgcgtgaggcgatg
gtcggcatcgagttccgcgacaccgacgcgttcatcgacgagatcccgcaggcgtacaag
ccgatcgaccgggtgatggccgatgccgcgtcactcgtgaccgtgcggcacacgcttcgg
cagctcgtcaacgtgaagggcgactga

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