Agromyces badenianii: DCE93_12865
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Entry
DCE93_12865 CDS
T05411
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agm
Agromyces badenianii
Pathway
agm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCE93_12865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agm03019
]
DCE93_12865
03400 DNA repair and recombination proteins [BR:
agm03400
]
DCE93_12865
Enzymes [BR:
agm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCE93_12865
Messenger RNA biogenesis [BR:
agm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCE93_12865
DNA repair and recombination proteins [BR:
agm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DCE93_12865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
KORA
Motif
Other DBs
NCBI-ProteinID:
AWB96429
UniProt:
A0A2S0WYJ0
LinkDB
All DBs
Position
2725701..2727845
Genome browser
AA seq
714 aa
AA seq
DB search
MTPIATDTQSAALAALRELVGRDDAGFHDGQFEAIEALVEGRRRALVVQRTGWGKSAVYF
VATLLLRRRGAGPTVLVSPLLALMRDQIAAAERAGVRAVAINSTNAHEWGDVLAQLDRDE
VDVLLVSPERLNNPSFREEQLPALVRRIGMLVVDEAHCISDWGHDFRPDYRRLRELISQM
PAEVPVLATTATANSRVVADVAEQLGTGAAEGSADGSGAGTDAGTGVLTIRGPLARSSLR
LGVLRLPDAPSRLAWLLSHLDDLPGSGIIYTLTVAAANDTARLLRERGHEVRAYTGQTDT
DERAESEGMLKRNEVKALIATSALGMGFDKPDLGFVLHLGAPSSPVAYYQQVGRAGRASE
SADVLLLPGTEDGAIWHYFATASMPDQERAERVIGALSDVPMSTPALEAMVDIRRTPLEL
LLKVLDVDGAVRRVRGGWVSTGTPWVYDAERYERIAAERLAEQQHMIDYEQTDGCRMEFL
QRSLDDDTAAPCGRCDNCAGVWYPREIAASASATAAESLDRVGVPIEPRRAWPTGADRLG
VHVKGRIAPAEQAGEGRALARLTDLGWGGTLRELFAPGSPDAPVSPQVLAACVRVLAGWG
WAERPVAVVAMPSRSRPLLVDSLARGLAEVGRLPYLGALEHDNGGPSGEPGGNSAFRLAG
LWNRFSADGLAMPPGGVLLVDDQADSRWTLTIAARELRRAGATEVLPFVLALRG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcgcgaccgacacccagagcgccgcactcgccgcgctgcgcgaactcgta
gggcgtgatgacgcgggcttccacgacggccagttcgaggcgatcgaggccctcgtcgaa
gggcgtcgacgcgcgctcgtcgtgcaacgcaccgggtggggaaagtcggcggtgtacttc
gtcgcgaccctgctgctgcgtcggcggggcgcgggcccgacggtgctcgtctcgccactg
ctcgcgctcatgcgcgaccagatcgccgcggcggagcgcgccggcgtgcgcgcggtggcg
atcaattcgaccaatgcacacgagtggggcgacgtgctcgcccagctcgaccgcgacgag
gtcgacgtgctgctcgtctcgcccgagcggctcaacaacccgagcttccgtgaagagcag
ctgcccgcgctcgtgcgccgcatcggcatgctcgtcgtcgacgaggcgcactgcatcagc
gactgggggcacgacttccggcccgactaccggcggctgcgcgagctcatctcgcagatg
cccgccgaagtgccggtgctcgccacgacggcgaccgccaacagccgggtcgtggcggat
gtcgcggagcagctcggcaccggtgcggccgagggctcggccgacggctccggggcgggc
accgacgcgggcaccggcgtgctcacgattcgcgggccgctagcgaggtcttcgctgcga
ctcggggtgctgcggctgcccgacgctccgagccgcctggcgtggctgctcagccacctc
gacgaccttcccggttcgggcatcatctacaccctgaccgtcgccgccgccaacgacacg
gctcgactgctgcgcgagcgcggccatgaggtgcgcgcctacacgggccagaccgacacc
gacgaacgcgcggagtccgagggcatgctgaagcgcaacgaggtgaaggcgctcatcgcg
acgagcgcgctcggcatgggcttcgacaagccagacctcggcttcgtgctgcacctcggc
gccccgtcgtcgcccgtcgcctactaccagcaggtcgggcgcgccgggcgcgcgagcgag
agcgccgacgtgcttctcctccccggcaccgaagacggcgccatctggcactacttcgcg
acggcgtcgatgcccgatcaggagcgtgccgagcgcgtcatcggcgccctctccgacgtg
ccgatgtccacacccgcgctcgaggcgatggtcgacatccgccgcacaccgctcgagctg
ctgctcaaggtgctcgacgtcgacggcgccgtgcgccgggtgcggggcggctgggtctcg
accggcaccccgtgggtctacgacgccgaacgctacgagcgcatcgccgccgagcgcctc
gccgagcagcagcacatgatcgactacgagcagaccgacggatgccgcatggagttcctg
cagcgatcgctcgacgacgacacggccgcgccctgcgggcggtgcgacaactgcgcgggc
gtctggtatccacgtgagatcgcggcatccgcgagcgccaccgccgccgaatcactcgac
cgcgtcggcgtgcccatcgaaccgcgccgcgcgtggccgacgggtgccgaccgtctcggg
gtgcacgtgaagggccgcatcgccccggccgagcaggcaggcgaagggcgcgcgctcgcc
cgactcaccgacctcggctggggcggcaccctgcgcgagctcttcgcgccgggctccccc
gacgcccccgtgtcaccgcaggtgctcgccgcgtgcgtgcgcgtgctcgccggctggggc
tgggccgagcgcccggtcgcggtcgtcgccatgccgtcgcgctcgcgcccgctgctcgtc
gactccctcgcccgtggcctcgccgaggtcgggcgactcccctacctcggcgcgctcgag
cacgacaacggcggcccgagcggtgagccgggcggcaacagcgcgttccggctcgccggg
ctgtggaatcgcttctcggccgacggcctcgccatgccgcccgggggcgtgctgctcgtc
gacgatcaggccgacagccggtggaccctcacgatcgccgcgcgcgagctgcgccgggcg
ggcgcaaccgaggtgctgcccttcgtgctcgcgctgcgcggctga
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