Affinirhizobium gouqiense: QTJ18_11160
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Entry
QTJ18_11160 CDS
T11881
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
agou Affinirhizobium gouqiense
Pathway
agou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QTJ18_11160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agou03021
]
QTJ18_11160 (rpoB)
03400 DNA repair and recombination proteins [BR:
agou03400
]
QTJ18_11160 (rpoB)
Enzymes [BR:
agou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QTJ18_11160 (rpoB)
Transcription machinery [BR:
agou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QTJ18_11160 (rpoB)
DNA repair and recombination proteins [BR:
agou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QTJ18_11160 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Trp_halogenase
Motif
Other DBs
NCBI-ProteinID:
WKC24593
LinkDB
All DBs
Position
599909..604045
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMVEEPEGGRPDEGLNAVFR
SVFPITDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGSK
SIKDIKEQSVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPATSLLMALGMDGEDILSTFYTKSTYER
AGDGWRIPFQPETLKGAKTLSDMIDADTGEVVVESGKKLTPRLLRQLSDKGLKALKASND
DLYGNYLAEDIVNFETGEIYLEAGDEIDEKSLALMLDAGFDEIPVLGIDHINVGAYIRNT
LAADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDCPDTVRTLRKEDILAVVRMLVDLRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVEGRVTNDVIYLSAMEEAKYYVAQANAPLDGDGSFSEEFVVCRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCINQRPLV
NVGDVIAKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLVDMLRGQVSVAGPKGFKKGVELSNAIVSEYPRSQWW
MFAVEDEKVQAEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGDMLEEYRKTMDISELRSELTEIYASESHDEVARFDDESLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLNESGQSVLYDGRTGEAFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIDPNEPGQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagtttttcggaaagatc
cccgaagtcactgagatgccaaacctcatcgaggttcagaaggcatcctatgatcagttc
ctgatggttgaagagccggaaggcggccgccccgatgaggggctgaacgccgttttccgg
tcggttttcccgatcaccgatttctccggcgcctccatgctggaattcgtgtcctacgaa
ttcgagccgccgaaattcgacgtcgaggaatgccgccagcgcgacctgacctatgcagcg
ccgctgaaggtgacgctgcgcctgatcgtgttcgatatcgacgaggacacaggttcgaag
tcgatcaaggacatcaaggaacagtcggtctacatgggcgacatgccgctgatgaccgat
aacggtaccttcatcgtcaatggtaccgagcgcgtcatcgtctcccagatgcaccgttcg
ccgggcgtgttcttcgatcacgacaagggcaagagccattcgtcgggcaagcttctgttt
gccgcgcgcgtcatcccctatcgcggttcctggctcgacatcgagttcgacgccaaggac
atcgtctatgcgcgtatcgaccgccgccgcaagatccctgcgacctcgctgctgatggcg
ctcggcatggacggcgaagacatcctgtcgaccttctataccaagtcgacctatgagcgc
gccggcgatggctggcgcattcccttccagccggaaacgctgaagggtgccaagacgctg
tcggacatgatcgatgccgataccggagaagtcgtggtcgaatccggcaagaagctgacg
ccgcgcctgctgcggcagctgtcggacaagggcctgaaagccctcaaggccagcaatgac
gacctctacggcaactatctcgccgaagacatcgtcaatttcgaaaccggcgagatctat
ctcgaagccggcgacgaaatcgacgagaagtccctggcgctgatgctggatgccggtttc
gacgagatcccggttctcggcatcgaccatatcaatgtcggcgcctatatccgcaacacg
cttgccgccgacaagaacgagaaccgccaggatgcgctcttcgatatctatcgtgtgatg
cgtccgggtgagccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gatgcggagcgctacgacctttcggccgtcggtcgcgtcaagatgaacatgcgtctggac
ctcgattgcccggatacggtgcgtaccctgcgcaaggaagacatccttgcggtggttcgc
atgctggtcgatctgcgcgacggcaagggcgaaatcgacgatatcgacaatctcggcaac
cgtcgtgtccgctccgtcggcgaattgatggaaaaccagtaccgcctcggtctgctccgc
atggagcgcgcgatcaaggaacgcatgtcgtcgatcgaaatcgatactgtcatgccgcag
gatctgatcaacgccaagccggccgccgccgcggttcgcgaattcttcggctcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctctcggaaatcactcacaagcgtcgtctt
tcggctcttggaccgggtggtctgacccgtgagcgtgccggcttcgaagtgcgagacgtt
cacccgacccattacggccgtatctgcccgatcgaaacgccggaaggcccgaatatcggc
ctgatcaactcgcttgccaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcgtcgagggccgggtgaccaatgacgtgatctacctctccgccatggaa
gaggccaagtattacgtcgcgcaggccaatgcgccgctggatggtgacggatccttctcc
gaggaattcgtcgtctgccgccattccggtgaagtgatgctcgctccgcgcgacaacatc
aacctgatggacgtctcgccgaagcagctcgtttcggttgccgccgctctcattccgttc
ctggaaaacgacgacgccaaccgcgcgctgatgggttcgaacatgcagcgccaggccgtg
ccgctggtcagggcagaagcgcccttcgtcggtaccggcatggagcctgtcgttgcccgc
gattccggcgctgcgatcgccgcccgccgcggcggcgtggtggatcaggtggatgcgacg
cgtatcgttatccgcgcgacggaagatctggatgccggaaagtcgggcgttgatatctat
cgcctgcagaagttccagcgttcgaaccagaacacctgcatcaaccagcgtccgctggtg
aatgtcggtgacgtgattgccaagggcgatatcatcgcagacggtccttcgacggatctc
ggcgatctggcgctcggccgcaacgcactcgtcgccttcatgccgtggaatggctacaac
tacgaagattcgatcctgatgtcggagcgcatcgtctcggacgacgtgttcacctccatc
catatcgaagaattcgaagtgatggcccgcgacaccaagcttggtccggaagaaatcacc
cgcgacattccgaacgtatcggaagaagcgctgaagaatctcgatgaagccggtatcgtc
tacatcggtgcggaagttcagccgggcgatatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcatcg
gatgtgcgcgacacctccatgcgcatgccgcccggtacattcggcacagtcgtcgaagtg
cgcgtcttcaaccgccacggggtggaaaaggacgagcgcgcaatggcgatcgagcgcgag
gaaatcgagcgcctggccaaggaccgcgatgacgagcaggccattctggaccgcaacgtc
tatggccgtctggtcgacatgctgcgcggccaggtatcggtcgccggaccgaagggcttc
aagaagggcgtcgagctctccaacgcgatcgtttcggaatatccgcgctcgcaatggtgg
atgttcgccgtcgaagacgaaaaggttcaggctgagatcgaagctctgcgcggccagtac
gatgaatccaagtcgcgccttgagcagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgccgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcatggcaacaagggcgtcgtatcgcgg
atcgtgcccgtggaagacatgccgttcctcgaagacggaacccatgtcgacatctgcctg
aacccgctcggcgttccctcgcgcatgaatgtcggacagatcctcgaaacccaccttgcc
tgggcttgcgccggcatgggcaagaagatcggcgacatgctggaggagtatcgcaagacg
atggacatcagcgagctgcgcagcgagctgacggaaatctatgcgagcgaatcccatgac
gaagtggctcgtttcgacgacgaatcgctggtgaagctggccgaagaggcaaagcgtggc
gtctctatcgcaacgccggtcttcgacggtgcgcatgagcccgacgtcgccgccatgctg
aagaaggctggtctgaatgaatccggtcagtccgtcctctatgacggccgtaccggtgaa
gccttcgaccgcaaggtgaccgtcggctacatgtacatgatcaagctgaaccacctggtc
gatgacaagatccacgcccgttcgatcggtccttactcgctcgtgacgcagcagcctctg
ggcggcaaggcgcagttcggcggtcagcgcttcggggaaatggaggtctgggctctggaa
gcctatggtgccgcctacaccctgcaggaaatgctgacggtcaagtcggacgacgtggct
ggccggaccaaggtctatgaagcgatcgtgcgtggcgacgatacgttcgaagccggcatt
ccggaaagcttcaacgttctcgtgaaggaaatgcgctcgctcggcctttccgtcgaactc
gagaactcgaagatcgacccgaacgagcccggccagctgcccgacgcagcggaataa
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