Affinirhizobium gouqiense: QTJ18_15700
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Entry
QTJ18_15700 CDS
T11881
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agou Affinirhizobium gouqiense
Pathway
agou02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agou00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QTJ18_15700 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agou03021
]
QTJ18_15700 (rpoD)
Transcription machinery [BR:
agou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QTJ18_15700 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
DUF4350_C
EFhand_Ca_insen
DUF4351
Motif
Other DBs
NCBI-ProteinID:
WKC25407
LinkDB
All DBs
Position
complement(1517463..1519517)
Genome browser
AA seq
684 aa
AA seq
DB search
MATKVKENDEAENERDGATDGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMAMLSDMGINVVEDEEAEEQASNDDGDDDDGETEGGELAPTSGTAVAAAKKKEP
ADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDE
LNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRKSRAASSGDDD
ITNVGGDLPPMEEEEEDDDESNLSLAAMEAELRPQVMETLDFIAESYRKLRKLQDQQVEA
RLSCTGTLSTGQERRYKELKDQLITAVKSLSLNQNRIESLVEQLYDINKRLVQNEGRLLR
LAESYGVKRDSFLEQYQGAELDPHWMKSISNLAARGWKEFARAENNKIREIRQEIQNLAT
ETGISITEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgacgaagcagagaacgaacgcgacggcgctacggac
ggtccgcttctcgatctttccgacgatgccgtcaagaaaatgatcaagctcgccaagaag
cgcggttacgtgacgatggacgagctgaacgccgtgctgccttccgaagaagtgacctcc
gagcagatcgaggacacgatggccatgttgtcggacatgggcatcaatgtcgtcgaggat
gaggaagcggaagagcaggcgtccaacgacgacggcgatgacgatgacggcgaaaccgag
ggtggcgaactggcgcctaccagcggcaccgcggttgcggccgccaagaagaaggaaccg
gccgaccgcacggacgatccggtgcgcatgtatctgcgcgaaatgggctcggtcgaactt
ttgtcgcgcgaaggcgaaatcgccattgccaagcgcatcgaggccggccgcgagacgatg
atcgcgggcctgtgcgaaagcccgctgacgttccaggccctcatcatctggcgcgacgag
ctgaacgaaggcacgacgctcttgcgcgagatcatcgatctcgaaacgacctattcgggg
ccggaagccaaggctgcgccgcagttccagagcccggaaaagatcgaagccgaccgcaag
gcggccgaggagaaggaaaagacccgcaagagccgcgcggcatcgtccggcgatgacgac
atcaccaatgtgggcggcgacctgccacccatggaggaagaggaggaggacgacgatgag
tccaacctctcgcttgccgccatggaagccgagctgcgcccgcaggtcatggaaacgctg
gatttcattgccgaaagctatcgcaagctgcgcaagctgcaggaccagcaggtggaagcc
cgcctgtcctgcaccggcactttgtccactgggcaggagcggcgctacaaggaactgaag
gaccagctgatcactgcggtgaagtcgctgtcgctcaaccagaaccgcatcgaaagcctg
gtcgagcagctttacgacatcaacaagcgtctcgtccagaacgagggtcgcctgctgcgt
ctcgccgaatcctacggcgtgaagcgcgacagcttcctggagcagtaccagggtgccgag
ctcgatccgcactggatgaagtcgatctccaacctggccgcccgcggctggaaggagttt
gcccgcgccgaaaacaacaagatccgcgaaatccgccaggagatccagaatcttgcgacc
gaaaccggcatttcgatcaccgaattccgccgcatcgtctcgatggtgcagaagggcgag
cgcgaggcgcgcatcgccaagaaggagatggtcgaggccaatctgcgcctcgtcatttcg
attgccaagaaatacaccaatcgcggcctgcaattcctggatctgatccaggaaggcaat
atcggcctgatgaaggcggtcgacaaattcgagtaccggcgcggctacaagttctcgacc
tatgcgacctggtggattcggcaggcgatcacccgttcgatcgccgaccaggcccgcacc
atccgcattccggtgcacatgatcgagacgatcaacaagatcgtccggacctcgcgccag
atgctgcatgaaatcggccgcgagccgacgccggaagagctggctgagaagctggcaatg
ccgctggagaaagtgcgcaaggttctgaagatcgccaaggagccgatctcgctcgaaacc
cccgtgggcgacgaagaggattcgcatctcggtgatttcatcgaggacaagaatgcgctc
ctgccgatcgacgcggcgatccaggcaaacctgcgcgagacgaccacgcgcgttctcgct
tcgctcacgccgcgcgaagagcgcgtgctgcgcatgcggttcggcatcggcatgaacacc
gatcacacgctggaagaagtcggccagcagttctcggtaacgcgcgagcgtatccgccag
atcgaagcgaaggcgctgcgcaagctgaagcatccaagccggtcgcgcaagctgcggtcc
ttcctggacagctga
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