Actinobacillus genomosp. 1: NYR63_02000
Help
Entry
NYR63_02000 CDS
T09109
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
agp
Actinobacillus genomosp. 1
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agp03019
]
NYR63_02000 (hrpA)
Enzymes [BR:
agp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NYR63_02000 (hrpA)
Messenger RNA biogenesis [BR:
agp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NYR63_02000 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_23
ResIII
NACHT
ABC_tran
AAA_30
T2SSE
NTPase_1
SLFN-g3_helicase
SRP54
PhoH
AAA_24
E217_GP41
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WGE91745
LinkDB
All DBs
Position
complement(426313..430212)
Genome browser
AA seq
1299 aa
AA seq
DB search
MKPSQKNFKNRPLDESQKALIANLKELTNTDYRRLRTRIHGISAIKKQEAKNNVIAEIER
EILSAQAAFQARKAQHSSLEITYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLP
KMCLELGRGVKGLIGHTQPRRLAARSVANRIAEELKSEMGVTVGYKVRFNDQVGENTLVK
LMTDGILLAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSAT
IDVERFSRHFNNAPIIEVSGRTFPVEVRYRPIVEEDDQDQLQGIINAVDELQAEGRGDIL
IFMSGEREIRDTAEVLQKQELRFTEILPLYARLSAAEQQRIFQPSGLNRVILATNVAETS
LTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICIRLYSE
EDFNARPEFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGIRLLEELGA
INGNKLTAIGRQLAQLPIDPRLGRMVIAAAQNGSLHEVMMIVSALSIQDPRERPQERQQA
ADEKHRRFADKDSDFLAFVNLWHYIQTQQKELTKNQFRKQCQKDFLNYLRVREWQDIYHQ
LRLSVREMGLPINSEDANYQQIHTALLTGLLSHIGLKDSEKMHYLGARNAHFYVFPTSAL
FKKQPKWLAASELVETTKLWARTVAKIEPEWIEPLAGHLLKRSYSEPHWSKSKGAVMAYE
KVSLYGIPVVANRLVNYGSIDPTVSREIFIRSAMVEGDWHNNYKFFKENNRLIKEVEDLE
HKSRRRDILVDEQTLFDFYDQRIGTEVVSSRHFDTWWKKAGQKDPELLNFEKSFLMNENA
NTVSDLDFPNFWYQGQLKLKLSYQFEIGKDHDGVTVHIPLPLLNQVEPEGFDWQIPGLRH
ELVVALIKSLPKATRRNFVPAPNYADAFLGRAEPYQKPLLESLAYELRRMTGVTIDPELW
DLSQLAPHLRMTFRVMDEKGKKLQESENLDELKFALKDQVQESLSTIADDGIEQSGVHLW
NFANLPQFYEQKKANFSVKAYPAIVDEQTAVGVKLFETEFEQARAMRAGLRRLLLLNVPS
PIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCISCAVDKLVDEFGGFVWTEEKFNELHEF
VRGNLNDTTAEIALQVEKILTLAFELNKRMKGKMDFTMAFALSDIKAQLSGLVYPDFVTK
TGYQRLADLHRYLTAIDKRLDKLGTDTNTDRAKMLRVEQVENAYKQLLTKLPKSKAIPDE
VLEIRYMIEELRVSLFAQQLGTKYPISDKRILNAIGEIK
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcgcaaaaaaatttcaaaaatagaccgcttgatgagagtcagaaagcatta
atcgcaaatttaaaagaactcaccaataccgattaccgccgtttacgtactcgtattcac
ggtatttctgccatcaaaaaacaagaagccaaaaacaatgtgattgcggaaattgaacgt
gaaattctctcggcacaagcagctttccaagccagaaaagcacaacattccagccttgaa
atcacttatcccgatttaccggtttccgctcgtcgtgaagaaatcttaaaactgattgca
gaaaatcaggtggtggtgattgccggtgaaaccggttcgggtaaaaccactcagctaccg
aaaatgtgcttggaactcggacgtggcgtaaaaggcttgattggacatactcagcctcgc
cgtttggcggcacgttcggtggcaaaccgtattgccgaagaattaaaaagcgaaatgggt
gtaacagtcggctacaaagtacgctttaatgatcaagtgggcgaaaatacccttgtgaaa
ttaatgacggacggtattttgcttgccgaaatccaaaacgaccgctatctcaatcagtac
gatacgttaattattgatgaagcacacgaacgctcactcaacaacgattttattcttggc
tatctgaaacaaattctgcataaacgtcccgatctaaaagtgatcattacctcggcaacc
attgatgtggaacgtttttctcgccactttaataatgcaccgattattgaggtttccgga
cgaaccttcccggtggaagtgcgttatcgtccaattgtggaagaagatgaccaagaccaa
ctacaaggtattatcaacgctgttgatgaacttcaagccgaaggtcgcggcgatattttg
atttttatgagcggtgaacgagaaattcgtgatactgccgaagtgctacaaaaacaagag
ctaagattcactgaaattctaccgctttacgctcgcctctcggctgccgaacagcaacgc
attttccagccaagcggtctaaatcgtgtgattttagccaccaacgtagcggaaacctca
ctcaccattccgaatatcaaatatgtgattgataccggtacggcgcgtatttctcgctat
agttaccgcactaaagtacaacgtttgccgattgagccgatttctcaagcctctgcgaac
cagcgaaaaggccgttgcggacgaaccagcgaagggatttgtatccgcctctattcagag
gaggattttaacgctcgtccggaatttaccgatccggaaattctgcgtactaatcttgcc
tcagtcattttgcagatgacctcgctcggtttgtcggatattgaagcgtttccatttgtt
gatcgtccggatactagacaggtacaggacggtattcgtttgctagaagaattaggtgcg
attaatggtaataaattaaccgcaatcggtcgtcaacttgcccaactccccatcgatcct
cgcttaggtcgtatggtcattgccgcggcacaaaacggttcattacacgaagtgatgatg
attgtctctgcgctttcgattcaagatccgcgtgaacgtccgcaagaacgccaacaggct
gcagacgaaaaacatcgccgttttgctgacaaagactccgatttcttggcgtttgtgaat
ttgtggcattacattcaaactcagcaaaaagaactgaccaaaaaccagttccgcaagcaa
tgtcaaaaagattttctcaactatttgcgtgtgcgtgaatggcaggatatttatcatcaa
ctacgtctttctgtacgagaaatgggcttgccgattaatagcgaagatgcaaattatcaa
caaattcacaccgctttactgaccggtttgctgtcacatatcgggctgaaagacagcgaa
aaaatgcactacctcggggcgagaaatgcgcatttttatgtgttcccaacctcggcgctt
ttcaaaaagcagccgaagtggcttgctgcgtccgaactggtagaaaccaccaagttgtgg
gcaagaactgtggcaaaaatcgaaccggagtggattgagccactcgccggacatttactt
aaacgcagttacagcgaaccgcattggtcaaaatctaaaggtgcggtgatggcgtatgaa
aaagtctcgctctacggtattccggtggtagcgaatcgtcttgtcaattacggttcaatt
gatccgactgttagccgcgaaatatttatccgctcggcaatggttgagggcgattggcat
aataattacaaatttttcaaagaaaataaccgcttgatcaaagaagtggaagacctcgaa
cacaaatctcgccgccgagatattttagtggacgaacaaaccctgttcgacttctacgat
caacgaatcggaacagaagtggtatccagccgccattttgatacatggtggaaaaaagcg
ggtcaaaaagatcctgaattgctcaactttgaaaaatcattcttaatgaatgaaaacgcc
aacacggtcagcgatttggatttcccgaatttttggtatcaagggcagcttaaactgaaa
ttaagttaccaatttgaaatcggtaaagatcacgatggtgtcaccgtgcatattccgtta
cctttacttaatcaagtagagccggaaggcttcgactggcaaattccagggcttcgccat
gagctagtggtggcgttaattaaatcattaccgaaagcaactcgccgtaattttgtaccg
gcaccgaactatgcagatgcgttcttaggcagagccgagccgtatcaaaaaccattgcta
gaaagtctggcttacgagcttcgccgtatgaccggtgtaactattgatccggagctgtgg
gatctgtcgcaacttgcgccgcatttgcgtatgacattccgtgtgatggatgaaaaaggt
aaaaaactacaagaaagcgaaaacttggacgaactgaaatttgcgctcaaagatcaagtg
caagaaagcctttcaacaattgctgatgacggtatcgagcaaagcggcgtacatttgtgg
aatttcgctaacttaccgcaattctacgaacagaaaaaagccaatttcagcgtgaaagct
tacccggcaattgtcgatgagcaaaccgcagtgggcgtaaaattattcgaaaccgaattc
gagcaagcccgtgcaatgcgagccggtttacgccgtttgttattactcaatgtgccttcg
ccaatcaaatacttacacgaaaaattgccgaacaaagcaaaacttggactttactttgcc
ccattcggtaaagtgttggaattgatcgatgactgtatctcttgtgccgtggataaatta
gtagatgaattcggcggttttgtttggaccgaagaaaaattcaatgaattgcatgaattt
gtgcgaggtaacttaaacgacactaccgcagaaattgcattacaagtggagaaaatcctc
acacttgccttcgagttaaacaaacgaatgaaaggcaaaatggacttcacaatggcgttt
gctctgtcggatattaaagcacaattaagcggtttggtttatccggattttgtgaccaaa
accggctaccaacgtcttgccgatttacaccgttatttaactgctatcgacaaacgatta
gacaaactcggcacggacacaaacactgaccgagcgaagatgttacgggtggaacaagta
gaaaatgcttataagcaattactcaccaaactgccgaaatctaaagcaatccctgacgaa
gtgctagaaattcgttatatgattgaagagttacgtgtcagtctgttcgcccaacaactt
ggcactaaatacccgatttcagataaacgtattttgaatgcgattggggagataaaataa
DBGET
integrated database retrieval system
