Actinobacillus genomosp. 1: NYR63_03445
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Entry
NYR63_03445 CDS
T09109
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NYR63_03445 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agp03400
]
NYR63_03445 (sbcB)
Enzymes [BR:
agp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NYR63_03445 (sbcB)
DNA repair and recombination proteins [BR:
agp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NYR63_03445 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NYR63_03445 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NYR63_03445 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Tim29
RLL
Motif
Other DBs
NCBI-ProteinID:
WGE92020
LinkDB
All DBs
Position
complement(747249..748793)
Genome browser
AA seq
514 aa
AA seq
DB search
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNVIGEPVMFYCKQTPDYLPSPEAV
MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY
EYSWKNGNSRWDLLDLVRACYALRPNGIEWITDENGVPNFKLENLTKANGIAHENAHDAM
ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARGNTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSVEELRTRLYTKKEELAESVAPVPLKGVHI
NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSAN
VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA
EQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANAQSEQLVSALNQVAEQGMDKAAKLEMLKALIK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaatcttacttttttcttttatgattacgaaagtttcggtgtgagtccggcg
ttagatcgtccggcgcagtttgccggtattcgtaccgatagcgattttaacgttattggt
gagccggtgatgttttattgtaagcaaacaccggattatttaccctcgcccgaagcggtg
atggtaaccggtattactccgcaacagtgtaacgctgaaggtgtgccggaaccggaattt
gccgcacgaatccacgctgaatttagccaaccgaatacctgtattttaggctataacaat
attcgttatgatgacgaaatgacccgttatacctttttccgcaatttttttgatccgtat
gaatatagttggaaaaacggtaattcacgttgggatctattggaccttgtacgagcttgt
tacgccttgcgtccgaacggaattgaatggataactgatgaaaacggtgtgccgaatttc
aaattagagaatctcaccaaagcgaacggcattgctcatgaaaatgcgcatgatgcaatg
gcggacgtttatgccacgattgcgatggcgaaattaattaagcaaaaacagccgaaactt
ttccaatttttctttgagaatcgtggtaagaaggaaattgagaaaatgatcgataccggt
gaaatgaccccgttggtacacgtttccggtatgttcggtaatgcacgaggcaataccgca
tggatcgcaccgatagcatggcatccgaccaatcaaaatcaagtattatgttgcgatcta
tccggcgatgtcagtgccttactgacagattcggtggaagaattgcgtactcgtttatac
actaaaaaagaagagttagctgaaagtgttgcacccgtgccgctaaaaggggtgcatatc
aatcgttgtccgattattgcaccggcaaaagtgttgttgcctgaaaatgcggctcgctta
ggcattgatcgtgagcgttgtttggaaaatctcaaattactgaaagcgaataaaagttta
gtgcgtgagaaagtgaccgaaatttttatggaagaacggcgctttgaaccttctgcgaat
gtggaaacgactctgtatgacggctttttctcaccggcagataaaaataatatggcgatt
ttgcgtacgttaccgccgcaagaattggcgcatcacggcttacaattcgccgatgaacga
gtagaagctttgttatttcattatcgagccagacattatcccgaaacattgagccgagcg
gaacagattaaatggcagaaatattgtcatcagcagatagatgccaaatcggcacaattt
gccgaagcgattgatagcttattccaaattcatcacgataatccggaaaaggtaaaatta
ttggaaaatttgaccgcttacgctgcacaaattgcggaatttcaggtagttaaacacacc
gctaatgcgcaaagcgagcagctagtttcagccttaaaccaagtggcggaacagggtatg
gataaagcggcgaagttggaaatgctaaaggcattaattaaataa
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