Actinobacillus genomosp. 1: NYR63_07575
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Entry
NYR63_07575 CDS
T09109
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NYR63_07575 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agp03021
]
NYR63_07575 (rpoD)
Transcription machinery [BR:
agp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NYR63_07575 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
WHD_Rok
Motif
Other DBs
NCBI-ProteinID:
WGE90687
LinkDB
All DBs
Position
complement(1640998..1642857)
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AA seq
619 aa
AA seq
DB search
MEQQLEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMGIKVLET
APDTDELMLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINEVQCAVAEYPEALTELIGFYAQVEEGTMRLSDLVTAFVDPNIQADAALED
LEVDLDAEEEATDVADVDDESEEEESDGNADTGDDNSIDPELAREKFYALREQHEKALQA
IQKHGRSHKKSREHIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRSEERQIQRYAVEY
AQMKKADFLKLFQGNETSEEWIEKAINAKKGAAPKLANYVDQIRVNIANLQRMEQSTGLT
VAQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQEM
GREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDS
ATAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSETLRSFLDD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaattagaacagcaatctcaattagaacttctgattgcccaagggcgtgaa
caaggctatttaacgatttcggaagtgcatgaccacttaccggaagagttggttgatgca
gagcagatcgaagatattattcaaatgatcaacgatatggggatcaaggttttagaaacc
gctccggataccgacgagctgatgcttgcggaaaatatcgctgatgaagatgtcgtagaa
gaagcgactaaagtactttctaccgtagaatccgagttaggtcgaaccacagacccggtg
cgtatgtatatgcgtgaaatggggacggttgagctacttacccgtgaaggcgaaattgat
attgcaaagcgtattgaagaaggtatcaacgaagtacagtgtgcggtagcggaatatccg
gaagccttaaccgagctaatcggtttttacgcacaggttgaagaaggtacgatgcgtttg
tcggatcttgttacggcatttgttgatccgaatatccaagcggatgcggcattagaagat
ttagaggttgatcttgatgccgaagaagaagcgacggatgttgcggatgtcgatgacgaa
agcgaagaggaagaaagcgacggcaatgcggataccggtgatgacaattcaatcgatcct
gaacttgctcgcgaaaaattctatgcgttacgcgagcaacacgaaaaagccttacaagcg
attcaaaaacacggtcgtagccataaaaaatcaagagagcatattcaagcactttcggat
attttccgtgagttccgtttagtaccgaagcaattcgatttgcttgtggaatcaatgcaa
aaaatgatgaaacaagtacgttcggaagagcgtcagattcaacgctatgcggttgaatat
gcgcaaatgaagaaagcggatttcttgaaactgttccaaggcaacgaaacgtcggaagaa
tggattgaaaaagcaatcaatgcgaaaaaaggtgccgccccgaaactggctaactacgtt
gatcaaattcgtgtcaatatcgcgaacttacaacgtatggaacaaagtaccggtttaacg
gtggcacagatccgtgaaatcggcggtcgtatcgcaaacggtgagttaaaagctcgtcgt
gcgaaaaaagagatggttgaagcgaacttacgtttagtaatctcgattgcgaaaaaatat
accaaccgtggtttacaattcttagatttaattcaggaaggtaacattggcttgatgaaa
gcggtagataagtttgaataccgtcgcggttacaaattctctacttatgcaacatggtgg
attcgtcaggcgattacccgttcaatcgcagaccaagcacgtactatccgtattccggtg
catatgattgaaaccatcaataaacttaaccgtatttctcgccaatgtttacaagaaatg
ggtcgtgaggcgactccggaagagttagcggaacgtatgggaatgccggaagataagatt
cgtaaagtgctgaagattgcaaaagagcctatctcaatggaaacaccgattggtgatgac
gatgattcacatttaggtgatttcattcaagacgaaagccttgaattaccgttagattcg
gcaactgcggaaagtttacgtttagcaacgaatgaagtgttggaaggcttaacgccgcgt
gaagcaaaagtattgcgtatgcgtttcggtattgatatgaacacagaccacacgcttgag
gaagtcggtaaacagtttgacgtaacgcgtgaacgtattcgtcagattgaagcgaaagca
ttacgcaaacttcgtcacccaagccgttcggaaactttacgtagtttcttagacgattag
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