Actinobacillus genomosp. 1: NYR63_07735
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Entry
NYR63_07735 CDS
T09109
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR63_07735 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agp03019
]
NYR63_07735 (rne)
03009 Ribosome biogenesis [BR:
agp03009
]
NYR63_07735 (rne)
Enzymes [BR:
agp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NYR63_07735 (rne)
Messenger RNA biogenesis [BR:
agp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NYR63_07735 (rne)
Ribosome biogenesis [BR:
agp03009
]
Prokaryotic type
rRNA processing factors
NYR63_07735 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
WGE90718
LinkDB
All DBs
Position
1673378..1676362
Genome browser
AA seq
994 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL
QWDLKVLLHHWDAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA
KNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIREATRQDRARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIAL
SILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPNESMETP
HFSVYRLRESEVLPTLSYDLAKHYEVREEDNQSFNHASPVADEALVTRNEPVITVESVLQ
STELNLQPAPTPVEQVKPSLLSRLVAKVKSFFAPEEKVEEKPKPKARNQRDRRNRRERPN
RAERQERKQAQAQQEEQKVQRQERNQERNETKKVRRQVVEEVAGVQEAQVEQRAVKEVAA
TERRQRRDLRKKVRVENAENTAIVAQVVEDKLQNVEKIQPLVTQDEQPAVANEERQETRE
NGRQRRLPRHLRVGNQRRRENNNRKENVAAAMPLAAAVASPEMASGKIWVKFSEPVSTNK
PNSKTEEKPRFLSVDEMLEQQTSEVVNEVIVETNLEDNASSIAPIVGFIKQPSDRDLVKE
NKERLHHHIEESEQADEQLVEKAMAKHVAPLGGFVSQHSDRDLVKEKNERVQKYQAQATQ
APAIESANPQAICLPVSDYQSEYSFNGKLGTFSRVIHTKAEMTVASAPEKVLEMVSATEW
TQSKYYFYGKGFGGHSSAVSHVHSAPRVANTDNE
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcgactcaaaaagaagagttgcgcgttgcgctcgttgat
gggcaacgtttattcgatttagatatcgaaagcccgggacacgaacaaaaaaaatcaaat
atctacaaagggaaaatcacccgtgttgaaccaagtcttgaagccgcattcgtagattac
ggtgcggaacgtcacggcttccttcctttaaaagaaatctctcgtgaatacttccctgcg
gattatgtattcaacggtcgcccgaatatcaaagatattatcaaagaagggcaagaagtg
attgtccaagtgagcaaagaagaacgcggtaataaaggtgcagcgcttaccactttcatc
tcgcttgccggcagttatttagtcttaatgccgaataacccgcgtgcgggcggtatttct
cgtcgtatcgagggtgatgaacgcttagaattaaaagaagcgttagattgcttagacgtg
ccggaagacgtcggtttaatcgtacgtaccgccggcgtaggtaaatcgccggaagagctt
caatgggatttaaaagttttattacatcattgggacgcaatcaaaaaagcggcggaatct
cgtcctgcaccattcttgattcatcaagaaagtgatgtgattgtgcgtgcgattcgtgac
tatctccgtcgtgacatcggcgaaattttaatcgataacaaaaaaatcttcgaaaaagcg
aaaaaccatattcgtttagtgcgtccggatttcatcaatcgtgtacgtttatacgaaggt
gaagtaccgttattcagccattatcaaatcgaatcgcaaatcgaatcggcgttccaacgt
gaagtacgtttaccgtcaggcggttcaatcgttattgacgtaactgaagcattaacggcg
attgatattaactcgtcacgttcaacccgtggcggcgatatcgaagaaaccgcactaaat
accaacttagaagcagcagacgaaattgcacgtcaattacgtttacgtgacttaggtggc
ttgattgtcatcgactttatcgatatgacccctgtgcgtcatcaacgtgaagtggaaaac
cgcatccgtgaagcgacacgtcaagaccgtgcgcgtattcaattcgggcgtatttcacgt
ttcggtttattagaaatgagccgtcagcgtttaagtccttcattaagcgaagcttcaagc
cacgtatgccctcgttgtcaaggtacgggtaaagtgcgtgataacgaatctatcgcactt
tcgattttacgtttattggaagaagaggcgatcaaagaaaataccgcacaagttcacact
atcgtgccggtgcaaatcgcatcttacttactgaatgaaaaacgtaaagcgatctcaagt
atcgaaaaacgtcatgatgtacaagtggtggtggtgccgaatgaaagtatggaaactccg
catttcagcgtatatcgtttacgtgaaagcgaagtgttgccaacgcttagttacgattta
gcgaaacactatgaagtacgtgaagaagataatcagtctttcaatcacgcaagtccggtt
gcggacgaagcgttagtgacacgtaatgaaccggtgattaccgttgaatccgtcttacaa
agtacagagcttaaccttcaacccgcaccgactccagtagaacaggttaaaccttcacta
cttagtcgtttggttgcaaaagtaaaaagtttctttgcgcctgaagagaaagttgaagag
aaaccgaagccgaaagcacgtaatcagcgtgatcgccgcaatcgccgtgaacgtccgaac
cgtgcggaacgtcaagaacgcaaacaagctcaagcacaacaagaagagcaaaaagtacaa
cgtcaggaacgtaatcaagaacgtaatgagacgaaaaaagtacgccgtcaagtggttgaa
gaagttgccggtgtacaagaagcacaagtcgagcaacgtgcggttaaagaggtagctgca
acggaacgccgccaacgtcgtgatttacgtaaaaaagtacgtgtagagaatgcggaaaac
acagctatcgttgctcaagttgtagaagacaagctacaaaacgtggagaaaatccaaccg
cttgttacacaggatgaacagccggcagtagcaaatgaggaacgtcaagagacacgtgaa
aacggtcgtcagcgccgtcttcctcgtcatcttcgcgtaggtaatcaacgtcgccgtgaa
aacaataatcgtaaagagaatgtagcagcggcaatgcctttagctgcggcagtcgcttct
ccggaaatggcaagcggtaagatttgggtaaaatttagcgaaccggtttcaaccaacaaa
ccgaatagcaaaacggaagaaaaacctcgtttcttatccgtagatgaaatgcttgaacaa
caaacgagcgaagttgtaaatgaagtgattgtcgaaacaaaccttgaggataatgcaagt
tctattgcaccgattgtcggttttattaaacaaccttccgatcgtgatcttgttaaagag
aacaaagagcgtttacatcatcatatcgaagaaagcgagcaagcggatgagcaattagtt
gaaaaagcaatggcaaaacacgttgcgcctttaggcggttttgtttcacaacattctgat
cgtgatcttgttaaagaaaagaatgagcgagtacaaaaataccaagctcaggcaacccaa
gccccggcgattgaaagtgctaatccgcaagcgatttgcttgcccgtatccgactaccaa
agcgaatatagctttaacggtaagttaggtacgttctctcgcgttatccatacaaaagcg
gaaatgacggtagcatccgcacctgaaaaagtattggaaatggtttccgcaaccgaatgg
actcaatcaaaatactatttctacggaaaaggttttggcggacattcaagtgcggtaagt
cacgttcattctgcacctcgtgttgccaatacggataatgaataa
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