Actinobacillus genomosp. 1: NYR63_09495
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Entry
NYR63_09495 CDS
T09109
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR63_09495 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agp03021
]
NYR63_09495 (rpoB)
03400 DNA repair and recombination proteins [BR:
agp03400
]
NYR63_09495 (rpoB)
Enzymes [BR:
agp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR63_09495 (rpoB)
Transcription machinery [BR:
agp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR63_09495 (rpoB)
DNA repair and recombination proteins [BR:
agp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR63_09495 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
WGE91038
LinkDB
All DBs
Position
2029470..2033498
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSDGQQGLEAAFRSVFPIV
SNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQ
NVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEILSMFFDKVNFEIQDNKLLMT
LVPERLRGETAAFDIEANGKVYVERGRRITARHIRTLEKDEIKQIEVPVEYIVGKVAAKD
YVDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETLRVDPTYDRL
SALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAVGRMKFNRSLNLEEGVGSGIL
SNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVRERLS
LGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVT
EDIEYLSAIEEGNYVIAQANSNLDENFRFTDTYVTCRGEHGESGLYKPEDIHYMDISTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAK
RGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPVAR
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
LTEELEILEAGLFTRVRNLLIEGGVSEAELDKVSREKWLEQTLDDEAKQNQLEQLAEQHE
ELRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVRRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQQQSVA
KLREYIQKAYDLGHGSQSVDLSTFTDEEVLRLAENLRKGLPLATPVFDGAHESEIKGLLE
LGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHQMEPGMP
ESFNVLLKEIRALGIDMELDED
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcatattcatattccgagaaaaagcgtattcgtaagagctttggtaaacgtccacaa
gttcttaacgtaccttatctattaacaattcagcttgattcttacgaaaaattcattcaa
agagattcagatggacaacaaggtttagaagcggcattccgttcagtattcccaattgtg
agcaacaatggtgcgactgaattacaatacgtttcttacgaattaggcgagccggtattt
gacgttcgtgaatgtcaaattcgtggtacaacctatgcagcaccattacgcgtaaaatta
cgtttagtgacttttgaccgtgaagcggcagccggtacggtaaaagacattaaagaacaa
aacgtgtatatgggcgaaatcccattaatgaccgataacggtacattcgtgattaacggt
accgagcgtgtaatcgtatctcagttacaccgtagtccgggcgtattcttcgattctgac
aaaggtaaaacccactcatcaggtaaagtgctttataacgcacgtattattccttaccgt
ggttcttggttagacttcgagtttgacccgaaagacaatctttatgcacgtatcgaccgc
cgccgtaaattaccggcaacgattattttacgtgctttaggttacacgaccgaagaaatc
ttatcgatgttcttcgataaagtgaactttgaaatccaagataataaattattaatgacg
ttggtgccggaacgcttacgtggtgaaaccgctgcgtttgatattgaagcgaacggtaaa
gtgtatgttgaacgtggtcgtcgtattaccgcacgtcatattcgtacattagaaaaagac
gaaattaaacaaatcgaagtgccggtagagtacatcgtaggtaaagttgcagcgaaagat
tatgttgatctttcaaccggcgaattagtttgtccggcgaatatggaaatctcaatggag
atgttagcgaaattatcgcaagcaggttacaaagagatcgaagtattatttactaacgac
ttagatcacggtccgtatatttctgaaaccttacgtgttgatccgacttatgaccgctta
agtgcattagtagaaatctaccgtatgatgcgtccgggcgagccaccgacaaaagaagcg
gcggaagcgttattcgacaatatgttcttctcagcagatcgttatgatttatcagcggtt
ggtcgtatgaagttcaatcgttcgttaaatcttgaagaaggcgtaggttcaggcatttta
agtaatgacgacattaccggcgtgatgaagaaattaatcgaaatccgtaacggtcgtggc
gaagtggacgatattgaccacttaggtaaccgtcgtattcgttcagtaggcgaaatggct
gaaaaccaattccgtatcggtttagtgcgtgtagagcgtgctgtgcgtgagcgtttatca
ttaggcgatttagacggcattactccgcaagatttaatcaatgcgaaaccaatttctgcg
gcagtgaaagagttcttcggttcttcacaactttcgcaatttatggaccaaaataacccg
ctttcagaggttacccataaacgtcgtatttcggcattaggtccgggcggtttaacccgt
gaacgtgcaggatttgaggttcgagacgtacatactactcactatggtcgtttatgtccg
atcgaaacccctgaaggtccgaacatcggtttgatcaactcactttcggtatatgcacgt
actaataactacggcttcttagaaacaccattccgtaaagtggtaaacggtcaagtaacc
gaagatatcgagtatttatcggcaatcgaagaaggtaactatgttatcgcgcaggctaac
tcaaacttagatgagaatttccgttttaccgatacttacgtaacttgtcgtggtgaacac
ggtgagtcgggtttatataaaccggaagatattcactatatggatatctcaacacaacaa
gtagtttctgttgcggcagcgttaattccgttccttgagcacgacgatgcgaaccgtgcg
ttaatgggtgcgaacatgcaacgtcaggctgttccgacattacgtgcggataaaccgtta
gtcggtaccggtatggaaaaaccaatcgcacttgactcaggtgtagcgattgtggcgaaa
cgtggtggtatcgtacaacgtgttgatgcttctcgtatcgtagttaaagtaaatgaagat
gaaacgattccgggcgaagcaggtatcgacatctataacttaattaaatatacccgttca
aaccaaaatacctgtatcaaccaaattccttgtgtgaatttaggcgagccggtagcgcgt
ggtgagatcttagcagacggtccttcaacagatttaggtgaattagcattaggtcaaaac
attcgtgtggcgttcatgccatggaacggttataacttcgaagactcaatgttagtttct
gagcgtgtggtacaagaagaccgtttcacaacaatccacatccaagaattatcttgtgtg
gcacgtgataccaaacttggtgcggaagaaattactgcagatattccaaacgtaggtgaa
tcggcattaagcaaacttgatgaatcaggtatcgtttacgtgggtgcggaagttaaaggc
ggtgatatcttagttggtaaagtaacgcctaaaggtgaaacccaattaacaccggaagaa
aaacttttacgtgcaattttcggtgagaaagcatctgacgttaaagattcttcattacgt
gtgccaaacggtacttcaggtacggttattgacgttcaagtatttactcgtgacggcgtt
gaaaaagataaacgtgcgttagaaatcgaggaaatgcaacttaaagaagcgaaaaaagat
ttaactgaagagttagagattttagaagcaggcttatttacccgtgttcgcaacttatta
atcgaaggtggcgtatctgaagctgaattagataaagtttctcgtgagaaatggttagaa
caaaccttagatgacgaagcgaaacaaaatcaattagaacagctcgcggaacaacacgaa
gaattacgtaaagagtttgaacgtaaacttgaaattaaacgcaacaagatcatccaaggt
gacgatttagcaccgggtgtattaaaagtggttaaagtttacttagcggttcgtcgtcaa
atccaaccgggtgataaaatggcgggtcgtcacggtaacaaaggtgttatctcgaaaatc
aacccggttgaagatatgccgtacgatgaaaacggccaaccggttgagatcgtattgaac
ccgctgggcgtaccatctcgtatgaacatcggtcagatcttagaaacgcacttaggttta
gctgcgaaaggtatcggtgaccaaattaacgcaatgattaaacaacagcaatctgttgcg
aaattgcgtgagtatatccaaaaagcatacgatttaggccacggttcacaatcggtagat
ttaagcacctttaccgatgaagaagtgttgcgtttagcagaaaacttacgtaaaggttta
ccgcttgcaaccccggtattcgacggtgcgcacgaaagcgaaatcaaaggcttattagaa
ttaggcggcttgccgacttcaggtcaaattactttatttgacggccgtaccggtgagaaa
ttcgagcgccctgtaaccgtaggttatatgtatatgctcaaattgaaccacttggttgat
gacaaaatgcacgcacgttcaaccggttcttatagtcttgttactcagcaaccgcttggt
ggtaaagcgcagttcggtggtcagcgtttcggtgagatggaggtttgggcattagaagca
tacggtgccgcttacaccttacaagaaatgctaacggttaaatcggatgatgtgaacggt
cgtacgaagatgtataaaaacatcgtggacggcacacaccaaatggaaccgggtatgccg
gaatcattcaacgtattgttgaaagaaattcgtgccttaggtatcgatatggagctggac
gaagactag
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