Actinobacillus genomosp. 1: NYR63_09500
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Entry
NYR63_09500 CDS
T09109
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agp
Actinobacillus genomosp. 1
Pathway
agp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR63_09500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agp03021
]
NYR63_09500 (rpoC)
03400 DNA repair and recombination proteins [BR:
agp03400
]
NYR63_09500 (rpoC)
Enzymes [BR:
agp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR63_09500 (rpoC)
Transcription machinery [BR:
agp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR63_09500 (rpoC)
DNA repair and recombination proteins [BR:
agp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR63_09500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WGE91039
LinkDB
All DBs
Position
2033626..2037897
Genome browser
AA seq
1423 aa
AA seq
DB search
MKDLVKFLKAQSKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFLDAEERWGDEFEAK
MGAEGIQALLRDMDLEHQCEMMREELQETNSETKRKKITKRLKLLEAFQQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKKMVEREEPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNAKGEGMYFLDPREAEKAYRT
GQAELHARVKVRITEHVKNEAGELVAETKLLDTTIGRAILWMIAPKGMPFKVFNQTLGKK
AISKLINESYRRLGLKESVILADQIMYTGFAYAARSGASVGIDDMVIPAQKHEIIRAAEA
EVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIPRNTLIDEKWCDVIDAESVDVIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKEGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKNDGAEVAVGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDAQGNDILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVSRVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRAKKRNQPEQAV
AFEAPVAKANGFATDADIEAEFEFVADDATQSLAALLNAGDEE
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagtaaagtttttaaaagcacaatcgaaatcgaacgacgattttgatgta
attaaaattggtttagcgtcaccggataaaatccgttcttggtctttcggtgaagtgaaa
aaaccggaaacaattaactatcgtacctttaaacctgagcgtgacggtcttttctgtgca
cgtatcttcgggccggtaaaagattacgaatgtttatgcggtaaatataaacgtttaaaa
caccgcggcgtaatctgtgaaaaatgtggcgttgaagtaacccaaactaaagtacgtcgt
gaccgtatgggtcatatcgaacttgcttgtccggtggcacacatttggttcttaaaatca
cttccgtcccgtatcggtttaatcttagatatgccgttacgtgatatcgaacgtgtactt
tacttcgaatcttatgttgttaccgaaccgggtatgaccgatttagaaaaaaatcagtta
ttaaccgaagaacagttcttagatgcggaagagcgttggggcgatgagtttgaagcgaaa
atgggtgcggaaggtattcaagcacttttacgcgatatggacttagagcaccaatgtgaa
atgatgcgtgaagagttacaagaaactaactctgaaactaaacgtaaaaaaatcacaaaa
cgcttaaaattattagaagcattccaacaatccggcaataaaccggagtggatggtaatg
accgtattaccggtgcttccaccggatcttcgtccgttagtaccgcttgacggcggtcgt
tttgcgacttcggatctgaacgatttatatcgtcgtgtgatcaaccgtaataaccgttta
aaacgcttattagatttagtagcgccggacatcatcgtacgtaacgaaaaacgtatgtta
caagagtctgttgatgcgttattagataacggtcgtcgtggtcgtgcgattacaggttct
aacaaacgtccgttaaaatctcttgcagatatgatcaagggtaaacaaggtcgtttccgt
cagaacttattaggtaaacgtgtggactattcaggtcgttcggtaattaccgtaggtcct
tacttacacctacaccaatgtggtttaccgaaaaaaatggcattggaattattccgtccg
tttatttattctaaattagaatctcgcggcattgcttcaacaatcaaagctgcgaagaaa
atggttgaacgtgaagaaccgatcgtatgggatatccttgcggaagttattcgtgaacac
ccgattttattaaaccgtgcgccgacacttcaccgtttgggtatccaagcgtttgaaccg
ttattaatcgaaggtaaagcaatccagttacacccgcttgtttgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggtacacgtaccattaacacttgaagctcagttagaa
gctcgtgcgttaatgatgtctaccaataacgtactttcaccggcaagtggtgacccgatt
atcgttccttctcaggacgttgtattaggtctttactacatgacccgtgagaaagtgaac
gcgaaaggcgaaggaatgtatttccttgacccgcgtgaagcggaaaaagcataccgtacc
ggtcaagccgaattacacgctcgcgtaaaagttcgtattaccgaacacgtgaaaaacgaa
gcgggtgaattagttgcggaaactaaattattagataccacaatcggtcgtgccatctta
tggatgatcgcaccgaaaggtatgccgtttaaagtattcaaccaaacgttaggtaaaaaa
gcgatttcaaaattaatcaatgaaagctaccgtcgtttaggtttaaaagaatctgtaatt
cttgccgaccaaattatgtataccggtttcgcatacgctgcgcgttcaggtgcgtcggtt
ggtatcgatgatatggttattccggcgcaaaaacacgaaattattcgtgcggcggaagcg
gaagtggcagagatccaagaacagtttaactcaggtcttgtaactgcaggtgaacgttat
aacaaagtaatcgatatttgggcggcggcaaacgaacgtgttgcaaaagcaatgatggaa
aacctttcaacggaagaagttatcaaccgtgaaggtaacccggaaaaacaagcgtcattc
aacagtatctttatgatggctgactcgggtgcgcgtggttctgcagctcagattcgtcag
ttagccggtatgcgtggtcttatggctcgtccggacggctcaatcatcgaaacaccgatt
accgcgaacttccgtgaaggtctgaacgttcttcagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggataccgcattaaaaacagcgaactcaggttacttaacacgtcgt
ttagtagacgtagcacaagacttagtaatcactgaagatgactgtggtacacacgaaggt
atcgtgatgactccgttaatcgaaggtggtgacgttaaagaagcattacgtgatcgtgta
ttaggtcgtgtggttgcggaagacgtattaaaaccgggtacggaagaagtattaattcca
cgtaacaccttaatcgatgagaaatggtgtgatgtgattgatgcggaatctgtggacgta
atcaaagtacgttcggtggtaacttgtaacacagacttcggtgtgtgtgcgaagtgttac
ggtcgtgaccttgctcgcggtcaccttatcaatcaaggtgaagcagtgggtgttatcgcg
gcgcaatcaatcggtgaaccgggtacacagctaaccatgcgtacgttccacatcggtggt
gcggcttctgcggcagcaaaagaatctagcatccaagtgaaaaacgcaggtacgattaaa
ttaactaacgccaaatttgtaactaacaaagaaggcaaaatcgtattaacttcacgtaac
acagaattaactgttatcgacacattcggtcgtaccaaagaaaactataaagtaccttac
ggtgcggtgctttctaaaaacgacggtgcagaagttgcagtaggtgaagtggttgctaac
tgggatccgcatacaatgccggtcatctcagaggtaagcggtcgcatccaattcagcgac
atcgtagacggcttaaccgttacgcgtcaaaccgacgaattaaccggtttatcatctatc
gtggtacaagatgtgggtgaacgtgcaacagcaggtaaagatttacgtccggcattacgt
ttagtagatgcacaaggtaacgatatcttaattccaggcacagacgttgcagcacaatac
tttttaccgggtaaagcaatcgtaaccttagatgacggtgcagaaatcgaagtcggtgaa
gcattagcacgtattccgcaagaatctgtgggtacgaaagatattaccggtggtcttcca
cgcgtagcagacttattcgaagcacgtaaaccgaaagagccggcaatccttgctgaaatt
tcaggtatcgtatcattcggtaaagaaactaaaggtaaacgtcgtttagtgattactccg
gcagaaggcgaagcattcgaagaaatgattccaaaatggcgtcagctcaacgtattcgaa
ggcgaaatggtacaacgtggtgacgtaatctctgatggtgcagaaactccgcacgacatc
ttacgtttacgtggcgttcatgctgtaacagattacatcgtaaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagttatcgttcgccaaatg
ttacgtaaagcggttatcaccaacgcatacgacagcgaattcctcgaaggggaacaagtt
gaggtttcacgcgtgaaaattgctaaccgtaaacgtgcagaagaaggcaaaccacttgtt
gagttcgaacgtgaattacttggtattaccaaagcgtcgcttgcaaccgagtcatttatc
tcagcagcgtcgttccaagaaaccacacgtgttcttactgaagcggcagtggcaggtaaa
cgtgacgaattacgtggcttgaaagagaacgtaatcgtaggtcgtttaatcccggctggt
acaggtttcgcatatcaccaaaaccgtgcgaaaaaacgtaaccagccagaacaagcggtc
gcttttgaagcgccggttgcaaaagctaacggattcgcaaccgatgctgatatcgaagca
gaattcgaattcgttgcagacgatgcaactcaaagcctagcagcgttattaaatgcgggt
gatgaagagtaa
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integrated database retrieval system
