Agarivorans sp. B2Z047: LQZ07_00620
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Entry
LQZ07_00620 CDS
T08685
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQZ07_00620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agq03019
]
LQZ07_00620
Enzymes [BR:
agq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQZ07_00620
Messenger RNA biogenesis [BR:
agq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQZ07_00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Phage_integrase
Cas3-like_C_2
CMS1
P-loop_SecA
HI1480
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UQN43009
LinkDB
All DBs
Position
complement(125416..126765)
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AA seq
449 aa
AA seq
DB search
MSFDSLGLSKPLLDAVAAQGYDTPSPIQAKAIPVILEGKDIMAAAQTGTGKTAGFTLPLL
ELLSKGPKVRANQVRALVLTPTRELAAQVGESVSTYGKNMDLSSTVVFGGVKINPQMQKL
RRGADVLVATPGRLLDLYQQNAFRFQQLEVIIFDEADRMLDMGFIHDIRKILALLPKQRQ
TLMFSATFSEEIRTLAKSLVKDPVEVSVTPPNATAKTVKQWIVPVDKSKKSGLLTQLIKD
NDWQQVLVFSRTKHGANRLAKHLEQRKISAAAIHGNKSQGARTRALAEFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGQAVSLVCADEVGDLIGIER
LTGQLLERKEVAGFEPSTQLPVTRDTRPLKAKKPKKAKSPRSEHKDGQRSSENARGNKPV
GKNRRHTGGGTNKTSRRFSKPKAANSGNK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgactccctgggtttatctaaacctttattagacgccgtagcagcacaaggt
tacgacacgccctctcctattcaagccaaagccattcctgtgattttagaaggcaaagac
atcatggccgctgcgcaaaccggcaccggtaaaacagcaggttttaccttgccattgctc
gagttgctaagtaaagggcccaaagttcgcgccaatcaagttcgcgcccttgtgcttacc
ccaacacgtgagttagctgcgcaggttggcgaaagcgtgagtacttatggtaagaacatg
gacctaagctctacggtagtatttggtggagtgaagattaatccgcaaatgcaaaagctg
cgtcgtggcgctgatgtgctggtagcaacccctggccgtttattagatctttaccagcaa
aacgcctttcgttttcagcagttagaagtgattatatttgacgaagctgaccgcatgtta
gacatgggttttattcacgacattagaaagattttggccttgctgccaaaacagcgccaa
accttaatgttctcggctaccttctcagaagagattagaacactggctaaaagcttagtt
aaagaccccgttgaagtatcggtgacaccaccaaacgcaactgccaaaaccgtaaaacag
tggattgtaccggttgataaaagtaaaaagtctggcctgcttactcagctgattaaagat
aatgattggcagcaagtattggtatttagccgcaccaaacatggcgccaaccgcttagcc
aaacacttagaacaacgcaaaatctcagcagcagcgattcacggcaataaaagccaaggt
gcacgtacccgagcgttggccgaatttaaaagtggtgatgtacgagtattagttgccacc
gatattgccgcacgtggcttagatatcgatcagttgccgcaagtagtgaactttgattta
cctaatgtggccgaagattacgtgcaccgcattggccgtactggccgagcgggttcaaca
ggtcaggcagtgtctttggtatgtgctgatgaagtgggagatttaattggcattgagcga
ctcactggccagttattagaacgtaaagaagtagccggttttgaaccaagcacccagtta
ccagtaacccgcgatactcgccccttaaaagctaaaaagccgaagaaggctaaaagtcca
cgtagcgaacataaagatggtcagcgctctagcgaaaatgcacgtggtaacaaaccggtc
ggaaaaaatcgccgccacaccgggggtggcaccaataagaccagccgccgctttagcaaa
cccaaagctgctaattcgggtaacaaataa
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