Agarivorans sp. B2Z047: LQZ07_03850
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Entry
LQZ07_03850 CDS
T08685
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LQZ07_03850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agq03021
]
LQZ07_03850 (rpoC)
03400 DNA repair and recombination proteins [BR:
agq03400
]
LQZ07_03850 (rpoC)
Enzymes [BR:
agq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LQZ07_03850 (rpoC)
Transcription machinery [BR:
agq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LQZ07_03850 (rpoC)
DNA repair and recombination proteins [BR:
agq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LQZ07_03850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UQN43621
LinkDB
All DBs
Position
831452..835657
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFVVTEPGMTSLERGQMLTEETYLDSLEEYGDEFEAKM
GAEAVLALLRHLELDQEIEVMREELQTTNSETKRKKTTKRLKLMEAFRDSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREGGEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERVNAEGEGMYLSGPKEAEKLYRAK
QASIHARVNVRITEVVVAEDGSKIEKTEIKQTTIGRAILWLIVPKGLPFDLVNQSMGKKQ
ISGLLNTCYRKLGLKHSVIFADQLMYTGFHYATLSGASVGINDMVIPDAKKDIVEEASDE
VSEIQEQFLAGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINKDGEEESQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTETDCGTEDGIIMTPHIEGGDVVEPLRERVL
GRVLVGDVIKPGTENEVLLKDKTLLDEKLCDLLEENSVDTVKVRSVISCANDFGVCALCY
GRDLARGHLVGRGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAENSIQVKNAGTIK
LHNAKVVTNSEGKLVVTSRSTELTIIDEMGQTKESHKLQYGAILEVVDGGAVTSGDTVAN
WDPHTHPIITEVPGRVKFIDMVEGVTVSRQTDELTGLSSIHVMDPNERPGAGKEMRPMVK
LVDGSGNDVLIAGTDIPAQYFLSAKAIVNLEDNAEVGVGDAIARIPQESSGTKDITGGLP
RVADLFEARQPKEPAILAEITGTISFGKETKGKRRLVITPAEGDAYEEMIPKWRNLNVFE
GEKVAKGEVIADGPESPHDILRLRGISPVSNYIVNEVQDVYRLQGVKINDKHIETIVRQM
LRKCLILDAGDSSFLLGEQAEVARVNIENRQLEAEGKRPAVYRRELLGITKASLSTESFI
SAASFQETTRVLTEAAVGGKQDELRGLKENVIVGRLIPAGTGYAYHENRRNQTEAPAPIT
ADEAADNLAALLNAAPGSETE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaagcaagaccgaagagtttgaaggcatt
aaaattggcctagcttcaccagaccagatccgcagttggtcgtttggtgaggtgaagaaa
ccagagacgattaactatcgaacttttaagcctgaacgtgacggtttattctgtgcccgc
attttcggtccagtaaaagattacgaatgtttgtgtggtaaatacaaacgtttgaaacac
cgtggtgttatttgtgagaagtgtggcgtagaagttacccaatctaaagttcgtcgtgat
cgtatgggtcacatcgaattagcttctcctgtagcgcacatctggttcttaaaatcacta
ccatcgcgtattggtttattactagatatgactttacgtgatattgaacgagttctttac
ttcgaatcatttgttgtgactgagcctggcatgaccagcttagagcgcggtcaaatgctt
accgaagaaacttacttggattcacttgaagagtacggtgacgagtttgaagctaaaatg
ggggctgaagctgtattagctttattgcgtcatttagagcttgaccaagaaatcgaagta
atgcgcgaagagttacaaactactaactctgaaactaaacgtaagaagaccactaagcgt
cttaagcttatggaagcgttccgcgattcaggtaacaaacctgagtggatgattatgacc
gtattaccggttcttccaccagatttacgcccactagtaccactagatggcggccgtttt
gctacgtctgatttgaacgatttataccgtcgtgtaatcaaccgtaacaaccgtttgaag
cgtctattagacctagctgctccagacatcattgtgcgtaacgaaaagcgtatgctgcaa
gaagcagtagatgccttgttagacaatggtcgtcgtggtcgcgctattactggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgtagattactcaggtcgttcggtaattaccgttggtccaaca
ctgcgtctacaccagtgtggtcttcctaagaaaatggcacttgagctattcaaaccattc
atttacggcaagctagagttgcgtggtcttgcgactacgattaaagctgctaagaaaatg
gttgagcgcgaaggcggtgaagtgtgggatattcttgaagaagttatccgcgaacaccca
gtattacttaaccgtgcaccaaccttgcaccgtttgggtattcaagcctttgagcctgtg
ctaattgaaggtaaagcaattcaattacacccgctagtgtgtgcggcttataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttaaccttagaagcacagttagaagca
cgttcgttgatgatgtcgaccaacaacgtactatcacctgctaacggtgagcctattatc
gttccttcgcaagacgttgtattgggtctgtactacatgactcgtgaacgtgttaatgct
gaaggtgaaggtatgtacctttctggccctaaagaggccgaaaagttataccgtgctaaa
caagcgagtattcacgcacgtgtaaacgtacgtattactgaggttgttgtagctgaagac
ggctctaaaatcgaaaaaactgagattaagcaaactaccattggtcgtgccatcttatgg
ttaattgtacctaaaggtttgccatttgatttagttaaccagtcaatgggtaagaagcaa
atctcaggattgctaaacacctgttaccgtaaactaggtcttaagcactcagttattttt
gctgaccaattaatgtacaccggtttccattatgcaaccttgtctggtgcctctgtaggt
attaacgacatggttatccctgatgctaagaaagacatcgtggaagaagccagtgacgaa
gtaagcgaaattcaagagcagttcctagctggtttggtaaccgcgggcgagcgttacaac
aaagtaatcgatatttgggcttcggctaacgaaaaagtatcgaaagcgatgatggacaac
ttgtctactgaaacagtaatcaacaaagatggcgaagaagagagtcaagactcgttcaac
agcatctttatgatggccgactctggcgcacgtggtagtgctgcacagattcgtcagcta
gctggtatgcgtggcttgatggctaaaccggatggttcgattatcgaaaccccgattgtg
gctaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggccgataccgcattgaagactgctaactctggttacttaacacgtcgtcta
gtagatgttgcacaggatttggttgttaccgaaactgactgtggtacagaagacggtatt
atcatgacgcctcacattgagggtggtgatgttgttgagccattacgtgagcgtgttctt
ggtcgtgttctagtaggcgatgtaattaagcctggtactgagaacgaagtactgcttaaa
gacaaaacactacttgacgagaaactgtgtgaccttcttgaagagaactcagtggatacc
gttaaagtacgctcagtaattagctgtgctaacgactttggtgtttgtgctctttgttat
ggtcgtgacctagctcgaggccacttggttggtcgcggtgaagcggttggtgtagttgct
gctcaatcaattggtgagcctggtacacagcttaccatgcgtaccttccacattggtggt
gcggcatcgcgtgcggctgcagaaaacagcattcaagttaagaacgcaggtactattaag
ctacacaacgctaaagtagtaactaacagcgaaggcaagttagttgtaacctctcgttct
actgaattgaccattattgatgaaatgggtcaaaccaaagaaagccacaaacttcaatac
ggtgcaatacttgaagtagttgacggtggtgcggttacctctggcgacacagttgctaac
tgggacccacatacacacccaattattactgaagtaccggggcgcgttaagttcatcgac
atggttgaaggcgtaactgttagccgtcaaactgatgaactaactggtctttctagtatt
cacgttatggaccctaacgagcgccctggcgctggtaaagaaatgcgtccaatggtgaaa
ttggtagacggttctggtaacgacgtacttattgccggtaccgatattcctgctcagtac
ttcttgtctgcaaaagcgattgtaaacttagaagataatgctgaagtgggtgttggtgat
gcaattgctcgtatcccacaagaatcaagcggtactaaagatattaccggtggtctacct
cgcgtagccgacttgttcgaagctcgtcagcctaaagagccagctattttggcagaaatt
accggtactattagtttcggtaaagaaaccaaaggtaagcgccgcttggtgattactcct
gctgaaggcgatgcttacgaagaaatgattcctaagtggcgtaacctaaacgtgtttgaa
ggtgagaaagtggctaaaggtgaagtaattgccgatggtccagaatcaccacatgacatc
ttacgtttgcgtggcattagccctgtttctaactacatcgtaaacgaagtacaagacgta
taccgtttacaaggtgtgaagattaacgataaacacattgaaactatcgtgcgtcaaatg
cttcgtaagtgtttgattctagatgctggtgattctagcttcttgctaggtgagcaagct
gaagttgcccgtgtgaatattgagaatcgtcaattagaagcagaaggcaaacgccctgcg
gtataccgtcgtgagttactaggtattactaaggcgtcactatctacagagtcgtttatt
tctgcggcttcgttccaagaaactactcgcgtgcttaccgaagcagcagtgggtggtaaa
caggacgagctacgcggtcttaaagagaacgttattgtcggtcgcttgattcctgctggt
actggttatgcctaccacgagaatcgtcgcaatcaaacagaagcgccagctccaataact
gcagatgaagcagctgataacttagcagctctactaaatgcagcccctggtagcgaaaca
gagtag
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