Agarivorans sp. B2Z047: LQZ07_05280
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Entry
LQZ07_05280 CDS
T08685
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQZ07_05280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agq03019
]
LQZ07_05280 (rnr)
03016 Transfer RNA biogenesis [BR:
agq03016
]
LQZ07_05280 (rnr)
Enzymes [BR:
agq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LQZ07_05280 (rnr)
Messenger RNA biogenesis [BR:
agq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LQZ07_05280 (rnr)
Transfer RNA biogenesis [BR:
agq03016
]
Prokaryotic type
tRNA degradation factors
LQZ07_05280 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UQN43882
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Position
1131106..1133622
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AA seq
838 aa
AA seq
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MQNQAVSATLKSTLLAALTEEMAPVSKDWLKALCSEEQRSQFSASLAELLDEGALVTTRI
GAYTLPERLGLVTGTIIGHRDGFGFLKTTQEGTDLFLPAKEMRKVFHNDFVLAAPSNMDK
RGRREGQVIRVLKPGKLELVGRFFVEGNHRYVVPDDSRINQDILIGKNDTAGARQGQVVV
IEVLSRPSAPKLAVGKVIDILGEKMAPGMEVQVALRNHDIPHEWPKAVTKAVSKLEEEVD
DAAKQNRVDLRELPLVTIDGEDARDFDDAVYCEAKKSGGWRLWVAIADVSYYVRPDAALD
KEALNRGNSVYFPDQVIPMLPEQLSNGLCSLNPKVDRLCMVAEMTISAAGRLSGYKFYEA
VMHSHARFTYNKVAAILDGDEALAQRYAEQVPHLQELHRLYSALKVSRAQRGGIELETQE
TRFIFNAQRKIEQIVPLTRNDAHKMIEECMIQANVAAAKFVEKHQQAILYRVHDRPGKER
LTNFRGFLNELGLPLGGGEEPQPSDYFKLVEAIQERPDLELIQTMLLRSMMQAVYQPDNI
GHFGLALKSYAHFTSPIRRYPDLLLHRVIKFLVNKLEAESAGKTVKNKWTVTGGYSYQDD
EMDKFGEVCSMTERRADDATREVSDSLKCEYMQDHVGTVLPATIAAVTGFGFFARLDEFH
IDGLVHINSLRGDYYHYDAARQILVGEKTGKRFRIGDAVTVKVASVNMADRKMEFVIVNK
DGQADEFDRPERTGKDGGRGKRFAKSTGDSERSRDGKKKQRHRDSKNKGKRRGTAKSKSN
ESSSENKGGFSPWQQRDPAAKKAKSNNEANAKTRKKPKKKRKQRPGKQERNAVKQQKN
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaggctgtgtcggccacactaaaatcgaccttactcgctgccttaacagaa
gaaatggcccccgtttctaaagactggctcaaagccttatgtagtgaagaacaacgtagc
caattctcggcaagccttgccgagttgcttgatgaaggtgctttggttactacgcggatt
ggtgcttataccttaccagagcgtttaggtttagtgaccggaaccattattggccatcgc
gatggttttggtttcttaaaaactacccaagaaggtaccgatttattcttacccgcaaaa
gaaatgcgtaaggtcttccataacgattttgtgttggcagcgccatctaacatggataag
cgcggtcgccgtgaaggccaagttattcgtgtattaaaaccaggtaaattagagttagtg
gggcgcttttttgtcgagggcaatcatcgctatgtagtaccggacgattctcgaattaac
caagatattctcattggcaaaaatgacacagcgggtgctcgccaaggccaagtggtagtg
attgaagtgcttagtcgcccctctgctccgaaactggctgtaggtaaagtgattgatatt
ctcggtgagaaaatggcaccgggcatggaagtgcaagttgctttgcgtaatcacgatatt
ccacatgagtggccaaaagcggtcactaaagccgttagtaagcttgaagaagaagtggat
gatgcggctaaacaaaaccgcgttgatctgcgtgaactaccattggttaccattgatggt
gaagatgcgcgcgattttgatgatgcagtatattgtgaagcgaaaaagtctggcggctgg
cgtttatgggtagctattgcagatgtgtcttattacgtacgccccgatgcagcactcgat
aaagaagcactaaatcgtggtaactcggtgtattttccagaccaagttatccctatgttg
ccagagcaactctccaatggattgtgttcacttaacccaaaagtagaccgcttatgtatg
gtggcagagatgaccatttccgctgctggccgtttatcgggttataaattttatgaagcg
gtaatgcactcgcatgcgcgatttacctataacaaagtggcggcgattctggatggtgat
gaagctttagcccagcgctacgccgaacaagttccgcacttgcaagagctgcatcgctta
tacagtgctttaaaagtaagccgtgcccagcgcggtggtattgagctagaaacgcaagaa
acccgttttatttttaatgcccaacgcaaaattgagcaaattgttccgctaacccgtaat
gatgcacacaaaatgattgaagagtgcatgattcaggcaaacgtggcagcggctaagttt
gtagaaaagcatcagcaagccattttatatcgggtgcacgatcgccccggtaaagagcgt
ttaactaattttagaggtttcctgaacgagttaggactgccattaggcggaggcgaagag
ccacagccgagtgactactttaaattagttgaagccattcaagagcgacctgatcttgag
cttattcaaaccatgttattgcgctctatgatgcaagcggtctatcaacctgacaacatt
ggccactttggtttagcgcttaaatcttatgcgcactttacttcacctattcgtcgttac
ccagacttgttattgcaccgagtgattaagtttctagttaataagttagaagcagagtcc
gccggtaaaaccgttaaaaacaaatggacagttaccggtggttactcttatcaagatgat
gaaatggataagtttggcgaagtgtgttcaatgactgaacgtcgcgccgatgatgccacc
cgcgaagtatccgacagtcttaaatgtgaatacatgcaagatcacgtgggcaccgtgtta
cctgcaaccattgctgcagtcaccggttttggcttttttgctcgcttggatgagtttcat
attgatgggttagtacatatcaactctttacgtggcgactattatcattatgatgccgct
cgccagatcttggtgggagagaaaaccggaaagcgctttagaattggtgatgcggttaca
gttaaagtagcctcggtaaacatggccgatcgtaaaatggaatttgtcatcgttaataaa
gatggacaggccgatgaatttgaccgcccagagcgaactggcaaagatggtggtcgcggc
aaacgctttgctaaatctaccggggattccgaacgctctagggatggtaaaaagaaacaa
cgccatcgcgacagtaaaaataaaggtaaacgccgcggcactgctaaatcgaagagtaat
gagagtagcagcgagaacaaaggtggctttagcccttggcagcaacgtgatcctgcggct
aaaaaggcaaaatcaaataatgaggctaatgccaaaacgcgcaaaaagcctaaaaagaaa
cgtaagcagcgccctggtaaacaagagcgtaacgctgttaaacaacagaagaattaa
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