Agarivorans sp. B2Z047: LQZ07_09885
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Entry
LQZ07_09885 CDS
T08685
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03030
DNA replication
agq03430
Mismatch repair
agq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQZ07_09885 (dnaE)
03430 Mismatch repair
LQZ07_09885 (dnaE)
03440 Homologous recombination
LQZ07_09885 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agq03032
]
LQZ07_09885 (dnaE)
03400 DNA repair and recombination proteins [BR:
agq03400
]
LQZ07_09885 (dnaE)
Enzymes [BR:
agq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQZ07_09885 (dnaE)
DNA replication proteins [BR:
agq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LQZ07_09885 (dnaE)
DNA repair and recombination proteins [BR:
agq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LQZ07_09885 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UQN44757
LinkDB
All DBs
Position
2153659..2157084
Genome browser
AA seq
1141 aa
AA seq
DB search
MVDGLKKVKPIVAKAAELNMPAIALTDQTNLCGLVKFYGEAHNQGIKPIVGCDFFVQSDE
LGDDQFRLTLLATNNKGYQNITMLISRAYLRGQLQGKPVIDKQWLSEHAEGVIVLSGGRQ
GDVGKALLKGNHDIVERSLAFYQQYFPNHYFLELIRTGRPDEENYLHMAVALAGDKGLPV
VATNEVVFLEEDQFQPHEVRVAIHDGFAIDDSRRPKKYSAQQYLRSEQEMQELFADIPEA
LQNSVEIAKRCNVTVRLGEYFLPDFPTEGLPIEEFFCKVSWDGLEERLEFLFPDPEERAK
RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYAQKI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELYGRDAVSQIITFGTM
AAKAVVRDVGRVLGHPFGFVDRISKLIPPDPGMTLEKAFEAEPRLPELYNADQEVRELID
MARILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDF
LGLRTLTIIQWALDMLNPVLEAKGEQPIDIAAISTTDPKSFRLLQDCKTTAVFQLESRGM
KDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREAISYPDETWQHESLQPI
LEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGV
DGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKAHYPAYFMAAVMSADMDNTDK
IVTLVDECNNMGLKLVPPDVNTGLFKFSVNADEEIVYGIGAIKGVGEGPIEAILEARQSG
PFIDLFDFCCRLDLKKINKRVIEKLIMAGAMDKLGPHRAAMMVTLPTAMQAASQHAKASA
RGQEDLFGIIAEEEDERPEFIDEPVWTEKVWLEGEKETLGLYLTGHPVNRYLKEFRQYTT
GRLVDIRPTGRGTTSTVAGLVLSTRVMLTKRGSKMGIIQLDDRSARLDVMFFSEAFDTYQ
ELLEKDRMLVIQGEVSVDDFSGGIKMTAREVMDLSMARERWMKKLRLRMCRDQLDELFWQ
RFYEVLEPYRAGTCPIAISYEGDNASGMLSLGTDWRITPSEDLIEALTQLLGQQQVTLEF
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggttgatggcttaaaaaaagtaaaacccatagttgcaaaagcggccgaattaaacatg
ccggccattgctttaaccgatcaaactaacctctgtggtttagttaagttttacggcgaa
gctcataaccaagggattaagcccattgtcggttgtgacttttttgttcagtcagatgaa
ttgggtgatgaccagtttcgattaaccttattagctactaataacaaaggttatcagaac
atcactatgctcatctcacgggcctatttgcgagggcagctgcagggtaagccggttata
gataagcaatggctgagtgaacatgctgaaggtgtgattgttctctcaggtggtcgccaa
ggtgatgtgggcaaagctttacttaaaggtaaccacgatatcgttgagcgaagtcttgca
ttttaccaacagtatttcccaaatcattactttttagagttaattcgcaccggccgcccc
gacgaagaaaactacctgcacatggccgttgcgttagcgggcgataaaggcttgcctgta
gtcgctacaaacgaagttgtttttttagaagaagatcagtttcaacctcatgaagtgcgg
gttgccattcatgatggttttgctatcgatgatagccgcagacctaaaaagtatagcgcg
caacaatatcttcgcagcgagcaagaaatgcaggagttgtttgcagatattcccgaagca
ctgcaaaactcagtagaaatcgccaaacgctgtaatgtgacggtgcgcttaggtgagtac
ttcttgcctgactttcccaccgaaggcctgcccattgaagagttcttctgtaaagtatct
tgggacggtttagaagagcgcttagagtttttgtttcccgaccctgaagagcgagcaaaa
cgtcgtccggaatacgatgaacgtttacaaattgaacttgatgtaattaaccaaatgggt
ttccctggttacttcctcatcgtaatggagttcattcagtggagtaaggataacaatatt
ccggttggacctggccggggctcgggtgctggttcgttggtagcttatgcgcaaaaaatt
accgatttagatccgcttgagttcgacttactattcgagcgatttttgaaccccgagcgg
gtatctatgcccgatttcgatgtcgatttttgcatggatcgtcgtgatgaggtaatcgac
cacgtagccgagctatatggtcgagatgcggtatcgcagattatcaccttcggtactatg
gctgctaaagcagtagtgcgtgacgtaggtcgggtattaggtcatccttttggttttgtt
gaccggatctctaagttgattccacccgatccgggaatgaccctagaaaaagcctttgag
gctgaaccgcgtttgccagagctgtataatgctgaccaagaagttcgcgagttaatcgat
atggctcgtatcctcgaaggggttacgcgtaacgcaggtaaacacgccggtggcgtagta
atttcgcccaccactattaccgactttgcgcccttatactgtgatgcagagggtaaaaac
ccagttacccagtttgataagaatgatgttgaatatgccggcttagtgaagtttgacttc
ttaggcttgcgtacactgaccatcattcaatgggctttggatatgcttaacccagtgtta
gaagccaagggtgagcagccaatcgatattgcggcaatttctaccactgacccaaaatca
tttagattactgcaagattgcaaaacaaccgcggtattccagttggaatctcgtggtatg
aaggatttgattaagcgtcttaagcccgactgttttgaagatatgattgcactggtggcc
ctgttccgtcccggtccgttgcaatctggcatggtagataactttatcgagcgtaaacat
ggtcgagaagcaatttcttaccctgacgagacttggcaacacgaaagcctgcaacctatt
ctagagccgacctacggtattattctttaccaagaacaggtaatgcagattgctcaggtt
ctagcaggttacaccttgggtggtgctgacatgttacgccgggctatgggtaagaaaaaa
cctgaggaaatggccaagcagcgggcggtatttgaagaaggctctattaagaatggggtt
gatggcgaactgtccatgaagatctttgacttggtagaaaagttcgctggctatggtttt
aacaagtctcactccgctgcttacgccttagtttcttatcaaaccttatggatgaaggcg
cattaccctgcgtactttatggctgcggtgatgtcggccgatatggataacaccgacaaa
attgttactttggtagatgaatgtaacaacatggggcttaagctggtgccgcccgatgta
aacactggcttgttcaagttctcggtgaatgccgatgaagaaattgtttacggtattggc
gcgattaaaggggtgggtgaaggccccattgaagcgattttagaggccagacaaagtgga
ccatttattgatttgtttgatttttgttgtcgcttagacctcaagaaaatcaataaaagg
gtgattgaaaagctgattatggctggagccatggacaagctgggtccgcatcgcgccgca
atgatggtgacattgccaaccgctatgcaagccgcttcacaacatgcaaaagcttcagct
cggggtcaagaagacttattcggtatcattgctgaagaagaagatgaacgcccagagttt
attgatgaaccagtttggacagaaaaagtctggttagaaggggaaaaagaaacccttggt
ttatacttaaccggtcacccagttaatcgctatttaaaagagtttcgtcaatatacaacg
ggacgcttggtagatatacgtcccaccggccgaggtactacatcaacggtagcgggctta
gtgttatctacacgggtaatgcttaccaagcggggctcaaaaatgggcatcattcaactc
gatgatcgcagtgcccgtttggatgtgatgttctttagtgaagcattcgatacctaccaa
gaattattagaaaaagatcgcatgttggtgattcaaggagaggtcagcgttgatgatttc
tccggaggcattaaaatgactgctcgtgaagtcatggatttgtcgatggctcgtgaacgc
tggatgaaaaaactgcgtttgcgaatgtgtcgcgaccagctagatgaactattttggcaa
agattttacgaagtattagagccttatcgagcgggaacctgcccaatagcaataagttat
gagggcgataatgccagtggcatgttaagcttaggcaccgattggcgaattacgccgagt
gaagatttaatagaggcgttgacccaactgctgggacaacagcaagtcaccctagaattt
aattaa
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