Agarivorans sp. B2Z047: LQZ07_14740
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Entry
LQZ07_14740 CDS
T08685
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LQZ07_14740 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agq03400
]
LQZ07_14740 (sbcB)
Enzymes [BR:
agq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LQZ07_14740 (sbcB)
DNA repair and recombination proteins [BR:
agq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LQZ07_14740 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LQZ07_14740 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LQZ07_14740 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
MoCoBD_2
MIOS_WD40
Motif
Other DBs
NCBI-ProteinID:
UQN41028
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All DBs
Position
3236513..3237925
Genome browser
AA seq
470 aa
AA seq
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MSDNTFLFHDYETFGVHPGRDRPCQFAAIRTDWDLNPIGKPIELFCQPPNDYVPHPQACL
VTGITPQLAMKKGLIESDFIERINNEFSQPGTCGVGYNSIRFDDEVTRYTLYRNFLDPYE
REWKNGNSRWDLIDMVRACYALRPEGIEWPTNDDGLVSFRLELLTAANGLSHANAHDAVS
DVYATIAMAKLIKDKQPKLFNYLLNLRNKKSVAQQFDLLNNKPLVHISGMFGAAQGCASW
VLPIAWHPINKNAMIVVDLNKDASVLLSLSAEEIHQRLYTARSELTADELPIPVKLIHTN
KCPVLAPASTLTPERAEELGLNRAQCRQSLDLLAKNKAEVEQKLSQVFAIEREFDQDSNP
DTALYNGFIGNADKNLMQVLRSSDPNLISKQQFQFADPRLNQLILRYKARNYPECLNESE
LQQWQAHRQASITEQVALVFPELEMLMSEYQNDTNKINILKSLYNYIENL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaacacttttttatttcacgactacgaaacttttggcgtacaccctgggcga
gaccgcccttgtcagtttgctgcaatacgtaccgattgggacttaaacccaataggaaag
cccattgagttgttttgtcagccgcctaatgattacgtacctcaccctcaagcttgtttg
gttacaggtattactccgcaattagccatgaaaaaaggcctgattgaaagtgacttcata
gaacgaatcaataatgagtttagtcaacccggtacctgtggtgttggctataacagcata
cgttttgatgatgaagttacccgctataccctataccgtaactttctcgacccttatgaa
cgtgaatggaagaatggtaattctcgttgggatttaatcgacatggttcgcgcgtgttat
gcgcttagaccagaaggtattgaatggccaactaatgacgatggcttagtcagctttagg
cttgaattgctcaccgccgccaacggtttaagccatgctaatgcccacgatgcggtatca
gatgtatacgccaccatcgccatggctaagttgattaaagataagcagcctaagctattc
aattatttgcttaatcttcgaaacaaaaagtccgtcgctcaacaatttgatctactcaac
aacaaacctttggtgcacatatcgggaatgtttggcgcagcacaaggctgtgcctcttgg
gtgttgcctattgcttggcatccaatcaacaaaaacgccatgatagtggtcgacttaaac
aaagacgccagcgttttactgtcactaagtgcagaggaaatccaccaacggctgtatacc
gcacgtagtgagttgactgccgatgaactgccgattccggtaaaacttattcacaccaat
aaatgcccagtactcgccccagctagcaccttaacgccggaacgagcggaagaattaggc
ttaaaccgagcacaatgtcgtcaaagtttagatttattagcaaaaaacaaagctgaggtt
gaacagaagctgtcgcaagtatttgccatagaacgtgagtttgaccaagacagtaacccc
gatactgccttatacaacggatttattggcaacgccgataaaaaccttatgcaagtttta
cgctctagcgatcctaacttgattagcaaacagcagtttcaatttgctgatccaaggctt
aaccaattaatcctgcgttacaaggcgcgcaattaccccgagtgtttaaatgaaagcgaa
ttgcagcaatggcaagcgcatcgacaagcctcaattaccgagcaagttgcgctggtgttt
ccagagttagaaatgctgatgagtgagtatcaaaatgatactaataaaataaatatacta
aaaagtctatataactacatagaaaacctttaa
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