Agarivorans sp. B2Z047: LQZ07_23450
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Entry
LQZ07_23450 CDS
T08685
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
agq
Agarivorans sp. B2Z047
Pathway
agq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQZ07_23450 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agq03019
]
LQZ07_23450 (rhlB)
Enzymes [BR:
agq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LQZ07_23450 (rhlB)
Messenger RNA biogenesis [BR:
agq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LQZ07_23450 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UQN42695
LinkDB
All DBs
Position
5069424..5070713
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AA seq
429 aa
AA seq
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MSKTHLTELRFAELGLQDKVLTALEQHGYHNCTPIQAQSLPILTTGKDIAGQAQTGTGKT
LAFLVATFNHLLTTAVPETRQQNQPRAIILAPTRELAIQIHNDARLLAKATGLKLGLVYG
GEGYASQRATLDEGVDILIGTTGRMIDYFKEGAFSLNAVQAMVLDEADRMFDLGFIKDIR
YLMRRMPEPKARLNMLFSATLSFKVKELAFEHMNEPEHVIVEPEQMTGARIQEELFYPSN
DDKMALLQTLIEEEWPERAIIFANTKHRCEDIWGHLSADKHRVGLLTGDIPQRKRVQILE
QFTEGKLDVLVATDVAARGLHIPSVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHAISLA
CEEYVFNLPAIEEYIKHPVPVSQYDTEALMRDLPKATRIHRTKGNNSRGGNRKNSRGNSG
HSNQRRQRH
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaactccgatttgccgagttaggactgcaagataaggta
ttaaccgccttagagcagcacggctatcacaattgcaccccaatccaagcgcaaagcctc
ccaatcttaaccactggtaaagatattgcgggccaagctcagaccggtacggggaaaact
ctagcctttttagttgctacgtttaatcatttgctaaccacagcagtgcccgaaacgcgt
caacaaaatcaaccgcgtgcgattattctcgcaccaactcgcgaattagctattcaaatc
cataacgatgctcgcttacttgctaaagcaacgggtctcaagttgggtttggtctatggc
ggcgaaggttatgccagtcagcgtgccactttagatgaaggtgtagacattcttatcggt
acaaccgggcgaatgatcgactacttcaaagaaggtgcatttagcttaaatgccgtgcaa
gccatggtattagatgaagctgatcgcatgttcgaccttggtttcattaaagacattcgt
tatttaatgcgccgcatgccagagccaaaagcgcgtttaaacatgctgttctcagccacg
ctttcttttaaggtaaaagaattagcgtttgagcatatgaacgaaccggaacacgttatt
gtagagcccgaacaaatgaccggcgctcgcattcaagaagaactgttttacccgtctaac
gacgacaaaatggccttgttgcaaactctaatagaagaagagtggccagaacgcgccata
atttttgctaatactaaacaccgttgtgaagatatttggggccacttaagtgccgacaaa
catcgcgttggtttgctaaccggtgatataccgcagcgtaagcgagtgcaaatactagaa
cagttcaccgaaggtaaacttgacgtattagtcgctaccgatgttgcagcccgtggcttg
cacattccgtcggtaacccatgttttcaactatgacttaccagacgatgccgaagattac
gtgcaccgtattggccgaacaggtcgtgctggcgcaagtggccatgccattagccttgcc
tgtgaagagtacgtatttaatttacctgccatagaagagtacattaagcacccagtgccg
gtaagccaatatgataccgaggcgctaatgcgtgatttacccaaggcaacgcgaatccat
cgcaccaaaggtaataatagccgtggcggtaaccgcaaaaatagtcgcggtaatagcggt
cactctaaccagcgacgtcagcgtcactaa
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