Agrobacterium tumefaciens H13-3: AGROH133_02922
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Entry
AGROH133_02922 CDS
T01432
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGROH133_02922 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agr03019
]
AGROH133_02922 (pnpA)
03016 Transfer RNA biogenesis [BR:
agr03016
]
AGROH133_02922 (pnpA)
Enzymes [BR:
agr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AGROH133_02922 (pnpA)
Messenger RNA biogenesis [BR:
agr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AGROH133_02922 (pnpA)
Transfer RNA biogenesis [BR:
agr03016
]
Prokaryotic type
tRNA degradation factors
AGROH133_02922 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ADY63071
LinkDB
All DBs
Position
circular:complement(84138..86285)
Genome browser
AA seq
715 aa
AA seq
DB search
MFNKHSVEIEWAGRPLKLETGKVARQADGAVIATYGETMVLATVVSAKSPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVIQH
DLENDPDVLSMVAASAALTLSGIPFMGPVGGARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDAIIKLAEVAAKEPREFEPEDFSA
LENEMLGLAETELRTAYKITEKAARYAAVDAVKAKVKAHFLPEEGEAKYSPEEIGAVFKH
LQAKIVRWNVLDTKSRIDGRDLSTVRPIVSEVGILPRTHGSALFTRGETQAIVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKIALEQAQGGRKHILGEMAN
AITESRGQLGEFAPRIEVMNIPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIAS
ASGKEIEAARKWIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERV
AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEVAADKKREDGEAAAE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaacactccgtggaaatcgaatgggctggccgcccgctgaagctcgagaca
ggcaaggttgcccgtcaggctgacggcgccgtcatcgcaacctacggcgagacgatggtt
cttgcgacggtggtttccgcaaagtctccgaagcctggacaggacttcttcccgctcacc
gtgaactaccaggaaaagacctacgcagccggcaagatccccggcggctatttcaagcgc
gaaggccgtccgtcggaaaaggaaacgctggtttcccgcctgatcgaccgtccgatccgc
ccgctgtttcctgaaggctacaagaacgacacgcaggttgtcgtaacggtcattcagcac
gacctcgaaaatgacccggacgttctgtcgatggttgccgcatccgctgcgctcacactg
tctggcattcctttcatgggcccggtcggcggcgcgcgcgttggttacatcaacggcgaa
tatgttctgaacccgcatcttgatgagatggatgaatcggttctggatctggttgttgcc
ggcacgcaggacgccgtcctgatggtggagtcggaagccaaggaactcaacgaagacgtc
atgctcggcgccgtcatgttcggccatcgcggcttccagccggttatcgacgcgatcatc
aagctcgctgaagttgccgccaaggaaccgcgcgaattcgaaccggaagatttctccgca
ctcgaaaacgaaatgctcggccttgccgaaaccgaactgcgcaccgcctacaagatcacc
gaaaaggctgcccgttacgccgccgtcgacgccgtaaaggcgaaggtcaaggctcacttc
ctgccggaagaaggcgaagcgaagtatagccctgaagaaatcggcgctgtcttcaagcac
cttcaggcgaagatcgttcgctggaacgttctcgacaccaagagccgcatcgatggccgc
gacctgtcgaccgttcgtccgatcgtttcggaagttggcatcctgccgcgtacgcacggc
tcggcgctgttcacccgtggtgaaacccaggcgatcgttgttgcgacgctcggcaccggc
gaagacgaacaatatgtcgacagcctgaccggcatgtacaaggaacgtttccttctgcat
tacaacttcccgccctactcggtcggtgaaacgggccgtatgggttccccgggccgtcgc
gaaatcggtcacggcaagctcgcatggcgcgctatccgtccgatgctgccgactgcggaa
cagttcccctacacgctgcgcgtcgtttccgaaatcaccgagtccaacggctcttcgtcg
atggcaacggtttgcggcacctcgcttgcactgatggacgctggcgtaccgctggccaag
ccagttgccggtatcgccatgggccttatccttgaaggcgagcgctttgcggttctctcc
gacatcctgggtgacgaagatcacctcggcgatatggacttcaaggttgcaggtactgcc
gacggcatcacctcgctgcagatggacatcaagatcgccggtatcaccgaagagatcatg
aagatcgctctggagcaggcacagggtggccgcaagcacatcctcggcgagatggcgaat
gccatcaccgagagccgcggccagcttggcgaattcgcaccgcgcatcgaagtgatgaac
attccggtcgacaagatccgtgaagtcatcggttcgggcggcaaggtcatccgcgaaatc
gtcgaaaagaccggcgccaagatcaacatcgaagacgatggcaccgtcaagatcgcttct
gcttccggcaaggaaatcgaagcggcccgcaagtggatccattcgatcgttgcagaaccg
gaagtcggccagatctacgaaggtacggtcgtcaaaaccgctgacttcggcgctttcgtc
aacttcttcggcgcccgcgacggcctcgttcacatctcgcagctcgcttccgagcgtgtc
gccaagacctccgacgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggcttc
gacgagcgtggcaaggttcgcctgtccatgaaggttgtcgaccaggcaaccggcaaggaa
gttgccgcagacaagaagagggaagatggcgaagccgctgccgaataa
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