Agrobacterium tumefaciens H13-3: AGROH133_03496
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Entry
AGROH133_03496 CDS
T01432
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr02020
Two-component system
agr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AGROH133_03496 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AGROH133_03496 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agr03021
]
AGROH133_03496 (rpoN)
Transcription machinery [BR:
agr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AGROH133_03496 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ADY63311
LinkDB
All DBs
Position
circular:complement(320955..322505)
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AA seq
516 aa
AA seq
DB search
MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLSN
DTPADAENFGDADSEGPDKSAPVTADSDDWYGDRAANLGEQLDTSFENVFPDDTEPRKPD
APELAGQWKSMPGQESGESYDLDDFVAAKQTLSDHLNQQLPLAISSVEDRMIADALIGQL
DETGYIAVDAVEDVAERLGAAPSAVERILETLQGFDPPGVFSRSLGECLAIQLAQKDRLD
PAMRAFIDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSTVSETIVP
DIIIRPSSAGGWLVEINPETLPRVLINQTYFAEVSRHKSREGEDQDFLSECMQTAHWLTR
SLDQRARTIMKVATEIVRQQDAFLVNGVDHLRPLNLKTVADAIKMHESTVSRVTSKKYML
TPRGLFELKYFFSVSISSVEGGDSHSAEAVRHRIKAMIAQEAADAVLSDDDIVDNLKKSG
IDLARRTVAKYREAMNIPSSVQRRREKKALARLSAF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcattatctgccagccttttgctgcgtcaaaaccagtctctcgtgatgacaccgcaa
ctgatgcagtccatccagctgcttcagatgacacatttcgaactgacgcagttcatcgcg
caggaggtggagcgcaatcctttgcttgaaattgcggcaaacgacggcgatttgagcaac
gatacccctgctgatgcggagaatttcggcgatgccgacagcgaagggcccgacaagtcc
gcgccggtaacggccgacagcgacgactggtacggcgatcgcgcggcaaatctcggcgaa
cagctcgacaccagcttcgaaaatgtctttcccgacgataccgaacccagaaagcccgac
gcacccgaactggcggggcagtggaaatccatgcccgggcaggagtcaggcgagagttac
gatctcgacgacttcgttgccgcgaaacagaccctcagcgaccatctcaatcagcaattg
cctctcgccatatcctctgtggaagacaggatgatcgccgatgcgctgatcggccagctc
gacgagaccggatatatcgccgtagatgccgtcgaagacgtcgctgaacggctgggggcg
gcgccttcggcagtggagcgcattctggagacgcttcagggctttgatcctcccggcgtg
ttttcccgctcgctgggcgaatgtctggcgatccagcttgcccagaaggacaggcttgat
ccggcaatgcgggcttttatcgacaatctggagcttctggcgaaacgggatttcgcttct
ctaaaaaaactctgcggcgtggatgaggaagaccttctcgacatgctggcggaaattcgc
acgctcaatccgcgtccgggcgctggttacgattcgaccgtttccgagacaatcgttcct
gatatcatcattcgcccctcctctgccggcggctggcttgtggaaatcaaccccgagacc
ctgccgcgcgtgctcatcaaccagacctatttcgcagaggtttcaaggcacaagtcgcgc
gagggagaggatcaggatttcctttccgaatgcatgcagacggcccattggctgacccgc
agcctcgaccagcgcgccagaacgatcatgaaggtggcgaccgaaatcgtgcgccagcag
gacgcctttctcgtcaatggcgtggaccacctgcgcccgctgaacctcaagacggtggcc
gacgccatcaagatgcacgaatccaccgtcagccgggtgacgtcgaaaaaatacatgctg
acgccgcgcggcctgtttgagctgaaatatttcttcagtgtttccatcagctcggtggaa
ggcggtgacagccattctgcagaagcggtgcgtcaccgcatcaaggcgatgatcgcgcag
gaggccgccgacgcagtgctttccgatgacgatatcgtcgataatctgaaaaagagcggt
atcgatcttgcccgccgcacggtggccaaatatcgcgaggcgatgaacatcccatcctcc
gttcagagacggcgcgagaagaaggccctggccagactgtcggcgttctga
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