Agrobacterium tumefaciens H13-3: AGROH133_05713
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Entry
AGROH133_05713 CDS
T01432
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03030
DNA replication
agr03430
Mismatch repair
agr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGROH133_05713 (dnaE)
03430 Mismatch repair
AGROH133_05713 (dnaE)
03440 Homologous recombination
AGROH133_05713 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agr03032
]
AGROH133_05713 (dnaE)
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_05713 (dnaE)
Enzymes [BR:
agr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AGROH133_05713 (dnaE)
DNA replication proteins [BR:
agr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AGROH133_05713 (dnaE)
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AGROH133_05713 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
ADY64198
LinkDB
All DBs
Position
circular:1219956..1223456
Genome browser
AA seq
1166 aa
AA seq
DB search
MGETVTRGETSGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYER
LVDLISRAYLEGESGGQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARER
LLALKSLFGDKLYIELQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGP
ILPRFTGASDDPEAAQRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVI
ERMGFPGYFLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIKVDLAAIPLDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLIN
AGGFDCFGRDRAEMIGGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWL
ASEKLLREYQVLGFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQ
ERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVITVQAEERPEGIGLR
IQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVEL
TEKYRISPEIAAALRSAPGVVDVELV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacggttacgcgtggagagacctctggcgaaacgctgaaaacacccggtttc
gtccatctgcgggttcactccgcttactccttgcttgagggggctttacccctcaagaaa
atcatgtccaaggccgttgcagacggccagccggccatagccattaccgacaccaacaat
cttttcgtcgcgctggagttttccgaaaaggcgcgtgatgagggcttgcagccgattatc
ggctgtcaggtgtcgatcgacatgcaggatgcggtggatgatcgccgcaaccacaacagc
caccttgccaagcttccagccatcgtgctgctcgcggcggatgccggagggtacgagcgg
ctggtggaccttatcagccgcgcttatctggagggcgaaagcggtggccagtccgtgcat
attacccgtgcatggctggaggaagcctccaatgccgggctgatcgtgctgacgggtgcc
tccggtggtccggtggatatggctctgaaggacgggcatacggcgcaggcgagagaacgc
ctgctggcgctgaaatcactcttcggtgacaagctttatatcgaattgcagcgtcagtcc
ggtttcgaccgcgtccatgagcggcgtatgattggacttgcttatgaacatgatattccg
ctggtcgccaccaacgaggcgttcttcccttcgagggccgattatgaggcgcatgacgca
ttgatggcggtggcgcataacgccatcgtttcggatgacagccggttccgcctgaccccc
gaccattatatgaaaagccgtgaggagatggcggagctgtttgccgaccttccggaggca
ctggaaaacaccgtcgaaatcgcaatgcgttgctcgtatgtgctgaagaagcgtgggccg
atcctgccgcgcttcaccggtgccagcgacgatcccgaagcggcgcaacgggcagaggcc
gaagagcttcgccgtcaggccgtcgaaggtcttgatcttcgccttgcggccctcggcatg
gcacctggctacgcagagcaggaatatcgcgacaggctggatttcgagcttggcgtcatc
gaacgcatgggttttcccggttacttcctgatcgttgcggacttcatcaaatgggccaag
cagcaggatattccagtcggccccggccgcggttcgggtgcaggctcgctcgtggcctat
gcgctgaccatcaccgatgtcgatcctctgcgcttctcgctgctgttcgaacgcttcctc
aatcccgaacgcgtgtcgatgcccgacttcgatatcgacttctgccaggaccgccgcgaa
gaggtgatccgctacgtgcagcgcaaatatggccgcgagcaggtggcgcagatcattacc
ttcggttcgttgcaggcgcgcgcggcattgcgcgacgtcggccgcgtgctggaaatgccc
tatgggcaggtggacaagatctgcaagctggtacccaacaacccggccaatccgacgccg
ctgtcaaaagcgatcgaggaagagccgcgtctgcaggaagaggcggacaaggaacccgtc
gttgcccgacttctggatatcgcccagaagatcgaggggctttaccgtcacgcatccacc
catgctgccggtattgtcattggtgaccggccgctgtcgaagctggtgccgatgtatcgc
gatccgcgctccgacatgccggttacccagttcaacatgaagtgggtggaaagcgccggc
ctcgtcaaattcgactttctcggtctgaagacgctgacggtgctgaaggttgccgtcgat
ttcgttgccaaacgcggcatcaaggtggatctcgccgcaattccgctggacgacgccaaa
acctacgagatgttgtcacgcggcgaaaccatcggcgtgttccaggtggaaagtgccggc
atgcgcaaggcgcttatcggcatgcgcccggactgcatcgaggacatcattgcgctggtg
gcgctttatcgtccgggtccgatggaaaacattccggtgtacaatgcccgcaagcatggc
gaggaggagctggagtcgatccaccccaccatcgaccacctcctgaaagagacgcagggc
gttatcgtctatcaggaacaggtgatgcagatcgcccaggttctgtcaggttattcgctc
ggcgaagccgatcttctgcgccgcgccatgggcaagaagatcaaggaggagatggaccag
cagcgcgagcgcttcgtagacggcgcgatcagaaacagcgtgtcgaagcctcaggccaac
accatcttcgaccttctggcgaaattcgccaattacggcttcaacaagagccacgccgcc
gcttacgccatcgtgtcctatcagaccgcctatatgaaggcgcattatccggtggagttc
cttgcggcctccatgacgctggatatggccaacacggaaaaactcaatgatttccgccag
gatgccagccgtctcggtatagaggtcgtggcaccttcggtgcagacgtccttccggcag
ttcgagacgggtgagaaccgcatctattattcgctggccgccatcaagggcgtgggcgag
ggcgcggtggaacacatcgttaccgtgcgcgacggcaagccatttgcaagcctggaggat
ttctgcctgcgcatcgatccgaagcagataaaccggcgtgtgctcgaaagcctcatcaat
gctggcggtttcgattgttttggccgcgaccgtgccgagatgatcggcgggctggaccga
attatcggttattcgcaacgcgcgcaggaaagccgcgttaccggccagtcggacatgttc
ggctccggcggcgcaagcggtccggaaaagctcatcctgcctgccttccagccgtggctc
gcctcggagaaactgctgcgcgaatatcaggtgctcggtttttacctgaccgcacatccg
ctcgatacctaccgccctgtattggaaaagttgcgggtgcagaatttcgccgatttttcc
gccgcagtgaaacagggtgcgaccgccgggcgtctggccggcaccgtcaccggcaagcag
gagcgcaagacccggaccggaaacaagatgggtatcgtcaccttctccgatgcctccggc
caatatgaggcggtgttgttttccgaagggcttgcccagtttcgcgatctgctcgaggtg
ggcaaatcccttgttatcaccgtgcaggcggaagagcgcccggaaggcataggtctgcgc
atccagacggcgcaatcgctcgaggaaaaatccgtccaaatgcagaaggcgttgcgggtt
tatgtgcgcgattcaggcccgctgaaaaccgttgcccgccacctcaataccaaaggtgac
ggatcggtttatttcatcgtcatcaaggacgaggggagccgtgagattgaggtggagcta
acggagaaatatcgtatttcccctgagatcgccgccgcacttcgctctgcccccggcgtt
gttgatgtggaactggtgtga
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