Agrobacterium tumefaciens H13-3: AGROH133_05739
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Entry
AGROH133_05739 CDS
T01432
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
agr
Agrobacterium tumefaciens H13-3
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agr03032
]
AGROH133_05739 (topA)
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_05739 (topA)
Enzymes [BR:
agr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AGROH133_05739 (topA)
DNA replication proteins [BR:
agr03032
]
Prokaryotic type
DNA Topoisomerases
AGROH133_05739 (topA)
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AGROH133_05739 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
ADY64209
LinkDB
All DBs
Position
circular:complement(1234267..1236984)
Genome browser
AA seq
905 aa
AA seq
DB search
MLTDQFQRKNNMNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFE
MSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDKPVKR
VVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRV
QSVSLRLVCDREAEIERFVSEEYWNISALLKTPRGDEFEAKLVSADGKKLQGRSIKTGDD
ANRLKALLEGATYIVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYE
GIDIGGETVGLITYMRTDGVQMAPEAIDAARRAIGEQFGDRYVPEKARFYSTKAKNAQEA
HEAIRPTDFNRTPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKDGEK
AGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDEGRLPQINARENLAKQKINASQHFTE
PPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIIIDKRKLIPHSRGRLVTAFLES
FFAKYVEYDFTADLEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNE
VLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNFTRQLTSDGSEAE
ASVSNEPKALGADPMTGEELTLRSGRFGPYIQRGDGKEAKRSSLPKGWKPEEIDHEKALA
LINLPRDIGKHPETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSIGLNRAVTVIAEKQ
SKGPGRGRNGTPAALKELGDHPDGGPITVRDGRYGAYVNWGKVNATIPKGQDPTSVTLDE
SLVLIAERIAKTGTGGKPAKAKKPAAKKADGDTAAKPKATKAKAATKSKTAAKPKAAAKP
KKAES
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgttaacggaccagttccagagaaaaaacaatatgaatgtcgtcgtcgtagaatctcct
gccaaagccaagacgatcaacaagtatcttggtccgggctacaaggttcttgcatccttt
ggccacgtccgggaccttcctgccaaggacggatctgtgctgcccgaccaggacttcgaa
atgtcctgggaggtcgatagcgcatccgccaagcgcatgaaggacattgccgacgcggtg
aaatcctccgacggcctgtttctcgcaaccgacccggatcgcgagggtgaagcgatttcc
tggcatgtgcttgatctcttgaagaagaagcgtgttctcggcgacaagccggtgaagcgc
gtggtcttcaacgccatcaccaaaaaggcggtactggacgcgatggcgaacccgcgcgac
atcgacgtgccgctggtcgatgcctatcttgcccgccgtgcgctggattatctcgtcggt
ttcaacctgtcgccggttttgtggcgcaagctgccgggcgcccgttccgccggccgcgtg
cagtccgtttcgctgcgtctcgtctgcgaccgcgaagccgagatcgagcgtttcgtctcc
gaggaatactggaacatcagcgcgctgttgaagacaccgcgcggtgacgagttcgaggcg
aagctggtttccgccgatggcaagaagctgcaaggccgttcgatcaagacaggagatgac
gccaaccgcctgaaggcgctcctggaaggcgcgacctatattgtcgatacggtcgaggcg
aaacccgtcaagcgcaatcccggcccgcccttcaccacctcgacgctgcagcaggctgcc
tcctcgcgcatgggcttttcggcctcgcgcaccatgcaggtggcccagaagctttatgaa
ggtatcgacatcggcggcgaaaccgttggtttgatcacctatatgcgtaccgacggcgtg
cagatggcgccggaagcgatcgatgccgcacgccgcgccatcggcgagcagttcggcgac
cgctatgtgccggaaaaagcacgcttctactcaaccaaggcaaagaacgcgcaggaagcg
cacgaagctatccgtccgaccgattttaaccgcacaccggatcaggtgaagcgttacctc
gatgccgaccagttgcgtctttacgacctgatctggaagcgcggcattgcgagccagatg
gcatctgccgaaatcgaacggaccacggtggaaatccttgccgacaaggacggtgaaaag
gccgggcttcgtgccgtcggttccgtcatccgcttcgacggcttcattgccgcctatacc
gaccagaaagaagatggtgagcagagcgacgacggtgacgatgaaggccgcctgccgcag
atcaacgcgcgcgagaacctcgccaagcagaagatcaacgccagccagcacttcaccgag
ccgccgccgcgttattcggaagcatcgctcatcaagaagatggaagaactcggcatcggc
cgtccttccacctatgcggcgacactgaagacgctaagcgaccgcgaatatatcatcatc
gacaagcgcaagctcattccccattcgcgcggacggctggtgacggctttcctcgaaagc
ttctttgccaaatatgtcgaatacgacttcaccgccgatctggaagaaaagctcgaccgc
atttccgcgggcgaactggactggaagcaggtgctgcgcgatttctggaaggatttcttc
gcgcagatcgaagataccaaggaattgcgcgttaccaacgtgctggatgcgctcaatgaa
gttctggccccgctggtcttccccaagcgtgaggacggctccgatccgcgcatctgtcag
gtttgcggcaccggcaacctttcgctgaagctcggcaaatatggcgctttcgtcggttgc
tccaattatccggagtgcaactttacccgccagctcacgtccgatggctcggaagccgaa
gcttccgtatccaacgagccgaaagcgctgggtgccgatccgatgaccggcgaggagttg
acgcttcggtctggccgtttcggcccgtacatccagcgcggcgatggcaaggaggccaag
cgctcctcgctgcccaagggctggaagcctgaggagatcgaccacgaaaaggcgctggcg
ctcatcaacctgccgcgcgatatcggcaagcatcccgaaaccggcaagatgatttccgcc
gggcttggccgctacggacccttcctgttgcatgacggttcctatgcgaacctcgaaagc
atcgaagatgtgttctcgatcggcctcaaccgtgccgttaccgtcattgccgagaagcag
agcaagggaccggggcgcggccgcaacggcacgcctgcggcgctgaaggaactgggtgat
cacccggatggcggcccgatcaccgtccgcgacgggcgttacggcgcttacgtcaactgg
ggcaaagttaacgccaccattccaaaggggcaggatccgacctccgtgacgctggacgaa
tcgctggtgctgattgccgagcgtatcgccaagaccggaaccggcggcaagcccgccaag
gccaagaaacctgctgccaagaaggccgatggcgacacagccgcaaagccgaaggcgaca
aaagccaaggccgcaacgaaaagcaagacggctgccaagccgaaggccgcagccaaaccc
aagaaggcagaatcgtga
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