Agrobacterium tumefaciens H13-3: AGROH133_07165
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Entry
AGROH133_07165 CDS
T01432
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AGROH133_07165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agr03021
]
AGROH133_07165 (rpoC)
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_07165 (rpoC)
Enzymes [BR:
agr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AGROH133_07165 (rpoC)
Transcription machinery [BR:
agr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AGROH133_07165 (rpoC)
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AGROH133_07165 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADY64889
LinkDB
All DBs
Position
circular:complement(1890420..1894619)
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSMKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDNPVTGENIVKARTLIDEADVAIIEKAGIQSVRIRSALTCEVQVGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
ILRNSDGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASG
AVAKLSRGGEARFHLSVDAILSVEPGSKVFQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDNVDRIELDDNNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSATQMLQDMTDPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactatcgtacgttcaagccggaacgcgatggtctcttctgcgcg
cgcattttcggacctatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgttgaagttacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgcccgttgcccatatctggttcctgaagtcg
cttccctcgcgtatctcgaccttgctcgacatgacgctgaaggatgtcgaacgcgttctc
tatttcgagaactacatcgtcaccgaacccggcctcacctcgatgaagcagaaccagctt
ctgtccgaggaagagtacatgatcgccgttgacgagttcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctacgagatgctggcttcgatgaacctcgaaaagatcgcc
ggcgacctgcgtgccgagcttgccgagaccacctcggatctcaagcaaaagaagttcatg
aagcgtctcaagatcgttgagaacttcatggaatccggcaatcgtccggaatggatgatc
atgaaggtcgttccggttattccgccggaccttcgtccgctggttccgctggatggtggc
cgtttcgcgacgtccgacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctgatcgagcttcgcgcgcctggtatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgataacggccgtcgcggtcgcgtcatcacgggt
gcgaacaagcgtccgctgaagtcgctttccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttctcggcaagcgcgtcgactattcaggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagcctgaagtttgggatatcctcgacgaggtcatccgcgag
catccggtccttctgaaccgcgcaccgacgctgcaccgtctgggtatccaggccttcgaa
cccatgctggttgaaggcaaggccattcagctgcatccgctcgtctgcacggctttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgcttgaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggcaaacggccacccg
atcatcgttccttcgcaggacatggttctcggcctgtattacctgtcgatcatgaaccag
aatgagcccggcgaaggcatggccttctcggacatcggcgaattgcatcacgcgcttgaa
aacaaggtcgtgacgctgcatgccaagatccgtggtcgtttcaagaccgtggatgctgac
ggcaagccggtttccaagatccatgaaacgacgcctggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgccgttcgacgtctgcaatcaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcattgcggccagaaagacacggtcatcttc
tgcgaccggatcatgcagctcggctttgctcacgcttgccgcgccggtatctcgttcggc
aaggacgacatggtcattccggacagcaaggttaagatcgtcggtgacaccgaagccttg
gtgaaggaatacgaacagcagtataacgacggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggtaaggcaaccgaaaaggtcgccgaagaaatgatggcgcgc
atcaaggctgtggaattcgacccggaaacgggccgccagaagccgatgaactccatctac
atgatgagccactcgggcgcccgcggttcaccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggccaagccctcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctt
gcagacaccgccttgaagacggcgaactcgggttaccttacccgccgtctcgtcgacgtg
gcacaggattgcatcgtcaactccgtggattgcggcaccgacaagggcctcaccatgacc
gccatcgttgatgccggtcaggtcgttgcctcgctcggcgcacgtatcctcggccgtacg
gctcttgatgacatcgacaatccggtaactggcgagaacatcgtcaaggccagaacgttg
atcgacgaagccgacgttgcaatcatcgagaaggctggcatccagtccgtccgtatccgc
tcggcactgacctgcgaagtgcaggtcggcgtttgcggcgtctgctacggtcgtgacctt
gctcgcggtactccggtcaacatgggcgaagccgttggcgtcatcgccgcacagtcgatc
ggtgaaccgggcacgcagctcaccatgcgtaccttccaccttggcggtacggcaaacgtg
gtcgaccagtcgttcctggaagcttcgtatgaaggcacgatccagatcaagaaccgcaac
atcctgcggaactccgatggcgttctcatcgcaatgggccgtaacatgtcggtcaccatt
ctcgatgagcgcggcgtggaacgttcctcgcagcgtgtcgcttatggttcgaagatcttc
gttgatgacggcgacaaggtaaaacgcggccagcgtcttgcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaggacctcgtcgacggtctt
tccgttctggaagccaccgacgaatccaccggcatcaccaagcgtcaggtcattgactgg
cgttcgacgccgcgcggttcggacctcaagcccgcgatcatcatcaaggatgcttccggc
gctgtcgcaaagcttagccgcggtggcgaagcccgcttccacctctccgtggacgcgatt
ctgtcggttgagcctggttcgaaggtcttccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcacgtcgtccgaaggatcatgctgtcatcgctgagatcgatggtacgatccgcctcggt
cgcgactacaagaacaagcgtcgcgtgatgatcgagcctgcggaagacggcgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactacatcgag
aagggtgaatacattctcgacggcaatccggcaccgcacgacattctggcaatcaagggc
gtagaggctttggcttcctacctcgtgaacgaaatccaggaagtctaccgactgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgag
atcaccgatgcgggcgacagccactacatcgttggcgacaatgtcgatcgtatcgagctt
gacgacaacaacgaccgcctgatcgaagaaggcaagaagcccgcttatggcgatccggtt
cttctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggctgcatcgttc
caggaaaccaccaaggttctcacggaagctgcgatcgccggcaagacggatacgctgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcattctcgaggaacgccgcaag
ggtacgggtgcaggctctgcaacacagatgctgcaggacatgacggatccggccgaataa
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integrated database retrieval system
