Agrobacterium tumefaciens H13-3: AGROH133_08032
Help
Entry
AGROH133_08032 CDS
T01432
Symbol
rhlE
Name
(GenBank) dead-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGROH133_08032 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agr03019
]
AGROH133_08032 (rhlE)
Enzymes [BR:
agr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGROH133_08032 (rhlE)
Messenger RNA biogenesis [BR:
agr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AGROH133_08032 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_19
CMS1
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADY65234
LinkDB
All DBs
Position
circular:2257438..2258940
Genome browser
AA seq
500 aa
AA seq
DB search
MAPRKALLLTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGK
TAAFGLPIIEMLMKQADRPANRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGG
ASINKQQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRK
ISKMVPAKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKND
KTDLLKKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGF
KDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAP
DETRLLHDIEKLMKIDIPVASGERPAGLASPTRPNNNNRGRNNNGGQPRGPREGGRHNGE
PRPSRHHAPRDADNDLEVTSDFKRVKTAEGDAGRPAGPRKQRRPARKPGGSGGNRHAPAG
GNGQEKRASGNGNGNRGRNR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttggcgccccgaaaggcattactattgaccagttttagcgaactcggcctctctgaaaag
attgtggccagcgttacccagctcggctacacaacccccacccccattcaggcaaaggcc
attccgctgctgcttgaaggccgtgatctcatcggcctcgcacagaccggcacgggcaag
acggcagcattcggcctgcccatcatcgaaatgctgatgaagcaagccgaccgcccggca
aaccgcaccacccgcaccctcatccttgcaccgacccgcgaactggtgaaccagatcggc
gaaaacctgcgctccttcgtgaagaagacgccactgcgcatcaaccaggttgtcggcggc
gcgtcgatcaacaagcagcagcttcagctcgaaaaaggcacggacgtcctggtggcgaca
cccggccgtctgctggacctcatcgcccgcaacgcgatctcgctttccaaggtcacctat
ctggtgcttgatgaagccgaccagatgctcgatctgggcttcattcacgatctgcgcaag
atttccaagatggttccggccaagcgccagaccctgctgttttcggcaacgatgccgaag
gcgatttccgagcttgccagcaacttcctgacggacccgatcaaggtcgaggtaacacct
ccgggcaaggccgccgacaaggtcgagcagtacgtgcatttcgtcgccggcaagaacgac
aagaccgaccttctgaagaagtcgctcaacgaaaacccggatggccgctcgatcgttttc
ctgcgcaccaagcacggcgcggaaaagctctacaagcatctggaacatatcggcttcaag
gtcgcttccatccacggcaacaagagccagggccagcgcgagcgggcactgaagggcttc
aaggacggtgagatcaaggttctggtcgcaaccgacgtcgctgcccgcggcatcgatatt
ccggccgtgacgcacgtcttcaactatgacctgccggaagtgcccgacgcctatgtccac
cgcatcggccgtaccgcccgtgccggccgcgacggcattgccatcgcgttctgcgcaccg
gacgaaacacgtctgctgcacgatatcgaaaagctgatgaagatcgatatcccggttgca
tccggtgaacgtccggccggtcttgccagcccgacgcgcccgaacaacaacaaccgtggt
cgcaacaacaatggcggccagccgcgtggaccccgcgaaggcggacgccacaatggcgag
ccccgtccctcgcgtcaccacgccccgcgtgatgcggacaatgatctggaagtcacgtca
gacttcaagcgcgtgaagacggcggaaggtgacgcaggtcgcccggccggccctcgcaag
cagcgccgccctgcccgcaagcccggcggcagcggtggcaaccgtcacgctcctgctggc
ggcaacggtcaggaaaagcgcgcttccggcaacggaaacggcaatcgcggccgtaaccgc
taa
DBGET
integrated database retrieval system
