KEGG   Agrobacterium tumefaciens H13-3: AGROH133_09307
Entry
AGROH133_09307    CDS       T01432                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
agr  Agrobacterium tumefaciens H13-3
Pathway
agr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AGROH133_09307 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agr03021]
    AGROH133_09307 (rho)
   03019 Messenger RNA biogenesis [BR:agr03019]
    AGROH133_09307 (rho)
Transcription machinery [BR:agr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AGROH133_09307 (rho)
Messenger RNA biogenesis [BR:agr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AGROH133_09307 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA
Other DBs
NCBI-ProteinID: ADY65747
LinkDB
Position
circular:complement(2820720..2821985)
AA seq 421 aa
MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKVLASQDIEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELELPTSKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
LDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatcgcctaccgacttgctaactttt
gctgaatccctggaagttgaaaatgcgagcaccatgcgcaagcaggagcttatgttcgca
atcctcaaggttctcgcgagccaggacatcgaaattatcggcgaaggcgtcgttgaagtc
ctgcaggacggtttcggttttctacggtccgcaaatgcaaattatctgccgggtccggac
gatatctacatttcgccctcgcaaattcgccgtttctctctgaagaccggcgatactgtc
gaggggccgatccgtggacccaaggaaggcgaacgttatttcgcgcttctcaaagtcaac
acgatcaattttgacgatcctgaaaagatccgtcacaaggttcacttcgataacctgacg
ccgctttatccgaatgagcggttcaagatggagctggagcttccgacatcgaaggatctg
tcgtcgcgtgtgatcgatctggtcgcgccacttggcaagggccagcgtggattgatcgtc
gcgccgccgcgtaccggtaaaactgttctcttgcagaacatcgcgcattccatcacggct
aaccatcctgaatgttacctgatcgttcttctgatcgacgaacgtccggaagaagtcacc
gacatgcagcgctcggtcaagggtgaggtggtgtcgtcaaccttcgacgaaccggctgta
cgccacgtccaggtggccgaaatggtcatcgaaaaggccaagcgccttgtcgaacatggc
cgcgacgtcgttatcttgctcgattccatcacccgcctcggccgagcttataacacggtc
gttccgtcttccggcaaggtcctgaccggtggtgtggatgccaacgcgttgcagcggccg
aagcgtttcttcggtgccgcacgtaacatcgaagaaggtggttcgctgacgattatcgcg
accgcgctgatcgacaccggcagccgcatggacgaggtcatctttgaagaattcaagggt
acgggtaactcggaaatcgtgcttgaccgtaaggtcgctgacaagcgtatcttcccggcg
ctcgatattctcaagtccggtacacgtaaggaagacctgctcgtgccgcgtcaggatctc
cagaagattttcgtgcttcgccgaattctcgcgccgatgggaacgatggatgccatcgag
ttcctgatcgacaagttgaagcagaccaagaccaattcggatttcttcgaatcgatgaat
acctga

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