Agrobacterium tumefaciens H13-3: AGROH133_09757
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Entry
AGROH133_09757 CDS
T01432
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AGROH133_09757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agr03400
]
AGROH133_09757
Enzymes [BR:
agr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGROH133_09757
DNA repair and recombination proteins [BR:
agr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AGROH133_09757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADY65955
LinkDB
All DBs
Position
linear:complement(217578..220070)
Genome browser
AA seq
830 aa
AA seq
DB search
MGLQSYNAKRSFDKTPEPKGDKVDAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVILWDRGVWRPIGDAKKGYRKGH
LDFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHDGGADILEERPESVKTGR
SVEEVAAKPKDTWNSKPVSKKTVSSSSGKKQAHALPKGARKQALPSFVPPALATLKPKPP
EGSRWLHEIKFDGYRLQVRIDHGKLQLLTRSGLDWTEKFGDAVAGALKSLPGETLMIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGTDLRGAALTDRKALLEKLLPA
SNPHLRYSEHFEESGGLVLDHACRLSLEGVISKVKDSKYVSGRKGNWVKSKCSMRQEFVI
GGYTLSSASDHAIGSLALGVYEEGKLRHVGRVGTGYTADIAEMLLGRLKPLGIDDSPYGE
KLTALARRDLHYVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPVGEIEREDKAVSEQG
TPQSKIKFTHPERLYWPDDGVTKEGLADYYTQVWRYMAPFVVNRPLALLRCPEGIDGQRF
FQKHAWRGVNKAIEQIKDPKDKGGEPLIRITDFDGMMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVSWQEVIDAALELKRRFEDAGLAAFVKTSGGKGLHVVAPLKPEAGWPA
LKAFAKTMADDMAKAEPEKYLAVATKAKRQGRIFLDYLRNGRGNTAVAPYSTRARPGAAI
SAPIEWTELSDEIGPAHFTVSNIGARLTALKKDPWDGFFAAARPLPKKAR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgcagagctataacgccaagcgcagtttcgacaagacgccggagccgaagggc
gacaaggtcgacgcgcagggatcgagtttcgtcatacagaagcacgatgcccgccgactg
cattacgatttccggctggagatggacggcgtccttaaaagctgggcggttacccgcggg
ccgagccttgacccggaggacaagcgccttgcggtccacgtcgaggaccaccctctaagc
tacggcgacttcgaaggcgtaatcccgaaaggtcaatatggcggcggcaccgtcattctt
tgggatcgtggtgtctggcgcccgattggcgacgcgaagaaaggctaccgcaaaggccat
ctcgactttgaactggagggcgaaaagcttaaaggccgctggcatcttgtacgtatgcat
ggaaagcccggtgaaagccgtgaaaactggctgctgatcaagggcgacgacgaagaggca
aggcatgatggcggcgccgatattctggaggagcggccggaatccgtgaagactggccga
agtgttgaagaagttgccgccaagccgaaggacacctggaattcgaagcccgtatcgaaa
aagaccgttagttcttcctcgggcaaaaaacaggcgcatgccctgccgaaaggtgcccgc
aaacaggcgctgccatccttcgtgccgccggcacttgcgacgctgaaacccaagccaccg
gaaggctcccgctggctgcatgagatcaagttcgacggctatcgcctgcaggtccgtatc
gaccacggcaaactccagcttctgacccgtagcggactggactggaccgaaaagttcggc
gatgccgtggcgggagcgctcaagtcgctgccaggcgaaacgctgatgatcgacggcgaa
atcgtggtggaacgggacagcggcgcctcggatttctcagccttgcagcaggacttgagc
gaagggcgcagcgaccgctttgttttttatgcgttcgatctcctatatctggatggcacg
gatttgcgcggggcggcgctgacggatcgcaaggcgctactggaaaagctgctgcccgcc
agcaacccgcatcttcgctacagcgaacatttcgaggaaagtggcgggcttgttctcgat
catgcctgccgcctcagcctcgaaggcgttatctccaaggtcaaggacagcaaatacgtc
tcgggccgcaagggtaactgggtgaaatccaagtgctcgatgcggcaggaattcgttatc
ggcggctatacgctttcctccgcgtcggaccatgccatcggctcactggcgctcggcgtt
tatgaggaaggcaagctgcgtcatgtcggccgcgtcggcaccggctataccgctgacatt
gccgaaatgctgcttggccgcctgaaaccgctgggcatcgatgatagcccgtacggcgaa
aagctcacggcacttgcgcgccgcgacctgcattacgtcaagccggaactggttgcagaa
gtggagtttcgtgcctggtccggagatggcaatctgcgccatgcatcattccgcggcttg
cgggaagacaagccggtgggtgaaatcgaacgcgaggataaagcagtgtcggaacaaggg
acgccgcagtcaaagatcaagttcacccatccggaacggctttattggccggacgatggc
gtgaccaaggaagggcttgccgattattacacccaggtctggcgctatatggcccccttt
gtcgttaaccggcctctggcgctgctgcgttgtcctgaagggatcgatggtcagcgcttc
ttccagaaacacgcctggcgcggtgtgaacaaggcgatagaacagatcaaggatccgaag
gacaagggcggcgaaccgcttatcaggattacggatttcgatggcatgatggccttggtc
cagtccgctgcgcttgaaattcacccatggggggcgacaaccgcgaactgggaaaagcct
gacatgatcaccatggatatagaccccggcgaggacgtgtcatggcaggaggtaatcgac
gcggcactggaactgaagcggcgtttcgaagatgccggtctggccgctttcgtgaaaacc
tccggcggcaaggggttgcatgtcgtggcacccttaaaaccggaagcgggatggccggcc
ttgaaggcctttgcaaagaccatggcggatgacatggccaaggcggagccggagaaatat
cttgcggtggcaaccaaagcgaaacgccagggccgcatcttcctcgactatctgcgtaat
ggcaggggcaatacggctgttgcgccctattcgacacgtgcacgacccggagccgccatt
tcagcgccaatcgaatggacggaactctcagatgagataggtccggcacacttcacggtc
agcaatatcggcgcgcgccttactgccctgaagaaggatccatgggacggctttttcgct
gccgcgcgacccctgccgaaaaaggcccgatga
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