Actinomadura graeca: AGRA3207_000560
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Entry
AGRA3207_000560 CDS
T07938
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agra
Actinomadura graeca
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agra03016
]
AGRA3207_000560
Enzymes [BR:
agra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AGRA3207_000560
Transfer RNA biogenesis [BR:
agra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AGRA3207_000560
Prokaryotic type
tRNA splicing ligases
AGRA3207_000560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXJ19944
UniProt:
A0ABX8QPU1
LinkDB
All DBs
Position
complement(565181..566374)
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AA seq
397 aa
AA seq
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MPYQTLKGGRVPIRMWADPDTVEDIALDQLRNVSALPWVEGLAVMPDVHYGKGTTVGSVI
AMRDAVSPAAVGVDIGCGMTAAGSSLTVEDMPDDLAGIRHRLERAVPVGRGAHRQPVDPS
GLPSLKERGWYDFWKAFDDLHPAVRARLGRARKQMGSLGGGNHFLELCADGDGAIWLVLH
SGSRNIGNELAEHHVEAARRLPHNQDLPDADLAVFLSGTTTMDAYRHDLFWAQEYARRNR
AMMMALAQDVVTKRFGEARCTWGEVISCHHNYVAEEEYDGVDLLVTRKGAIRAASGDLGI
IPGSMATGTYIVRGLGNETAFNSASHGAGRRMSRTKARRTYTVDDVVEQTRGVECRKDGG
IIDEIPAAYKDLETVIEAQSDLVEVVAHLRQLICIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgccgtaccagacgctcaagggcggccgcgttcccatccggatgtgggccgaccccgac
accgtcgaggacatcgccctcgaccagctccgcaacgtctccgccctgccgtgggtggag
ggcctcgccgtcatgccggacgtccactacggcaagggcaccacggtcggctcggtgatc
gcgatgcgcgacgcggtgtcgcccgccgccgtcggcgtggacatcggctgcgggatgacc
gccgccgggtcgtccctcaccgtcgaggacatgccggacgacctcgccggaatccggcac
aggctggagcgcgcggtccccgtcggccgcggcgcgcaccggcagccggtcgacccgtcc
ggcctcccgagcctgaaggagcgcggctggtacgacttctggaaggcgttcgacgacctg
cacccggcggtgcgcgcccgcctcggccgcgcgcgcaagcagatgggctcgctcggcggc
ggcaaccacttcctggagctgtgcgcggacggcgacggcgcgatctggctcgtcctgcac
tcgggttcccgcaacatcggcaacgagctggccgagcaccacgtcgaggccgcccgcagg
ctcccgcacaaccaggacctcccggacgccgacctcgccgtgttcctctccggcaccacg
acgatggacgcctaccgccacgacctgttctgggcgcaggagtacgcgcgccgcaaccgc
gcgatgatgatggcgctcgcgcaggacgtcgtcaccaagcgcttcggcgaggcccgctgc
acgtggggcgaggtcatctcctgccaccacaactacgtggcggaggaggagtacgacggc
gtcgacctgctcgtcacccgcaagggcgcgatccgcgccgcctccggcgacctcggcatc
atcccgggctcgatggcgaccggcacctacatcgtccgcggcctcggcaacgagaccgcc
ttcaactccgcctcccacggcgcgggccgccggatgagccgcaccaaggcccgcaggacc
tacaccgtggacgacgtggtcgagcagacccgcggcgtcgaatgccgcaaggacggcggc
atcatcgacgagatccccgccgcctacaaggacctggagacggtgatcgaggcccagtcc
gacctggtcgaggtagtggcccacctccgccagctcatctgcatcaagggctga
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