Actinomadura graeca: AGRA3207_001707
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Entry
AGRA3207_001707 CDS
T07938
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agra
Actinomadura graeca
Pathway
agra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGRA3207_001707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agra03019
]
AGRA3207_001707
03009 Ribosome biogenesis [BR:
agra03009
]
AGRA3207_001707
Enzymes [BR:
agra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AGRA3207_001707
Messenger RNA biogenesis [BR:
agra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AGRA3207_001707
Ribosome biogenesis [BR:
agra03009
]
Prokaryotic type
rRNA processing factors
AGRA3207_001707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QXJ20911
LinkDB
All DBs
Position
complement(1857060..1860203)
Genome browser
AA seq
1047 aa
AA seq
DB search
MLDNEADSAAAEGTGNENDDTATGTDVTARTRRRASRPAGPPPDVEEAPAAPAQAAPPAS
AEEPSPAQEPEPAPRRRVRRAAASEPAPAAEGEPAPGDEAASQPASQPASEAPAKRTRTR
TRTRAARAAEDEGGTAETAEPVPMTGAETSPEEAPAEKTSARTRTRRRAAAAAPVTPDEP
DVPSVPGVPGVPGAEAGQVSEAEPAGGVVPGVTFQPPMVVFQPPQPKAETPTRPKDEPKS
AEPAAEDRDEHGPASAEDDDEDDGRPSRRRRRRGGRGRGRGKDGVDDEAQAEDAAEAEEP
KEAKEAKDEQPAKAGKARSAKTKAKEKAAKAEQDDAQDAGGEDDDDQGGTSRRRRRRRRR
SGGDGEGGTDDPPNTVVHVRDARAVEDEVQSVRGSTRLEAKKQRRREGREQGRRRPPVIT
EAEFLARREAVERVMVVRQEGERTQIAVLEDGVLVEHYVNRATHQSYVGNVYLGKVQNVL
PSMEAAFVDIGKGRNAVLYAGEVNWDVAGLEGQPRRIESALKSGQSVLVQVTKDPLGHKG
ARLTSQVSLPGRYLVYVPDGSMTGISRKLPDKERSRLKSILKRVMPENAGVIVRTAAEGA
TEEELARDVSRLAAQWDNIQKKVKTASAPSLLYGEPDLTIRVVRDIFNEDFSKLVVSGGD
AWDTVSEYVEYVAPHLAERVERWDGDQDVLGAFRVDEQIAKALDRKVWLPSGGSLVIDRT
EAMTVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESN
RDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSETCESCNGRGIHVH
LTPVEPKPDKASAKEGGRRRKRKGEVERAVEEKLAQHETTPKETSEPEPRDEPEPARPAR
SRAKKSGPAKRPAGPPPDVDADEAPVQAAVEAAEAAAEVAGTSPGALAADEPVAADDADG
AEAPAAGTAPAGTAPADAAPAAPAEANGAEASGAQDHGAEPGAAESNGSAPSAEANGAAA
VDADEPGAVRRRRVRRPRAAAKAADSD
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacaacgaagccgattcggccgctgccgaaggcaccggcaacgagaacgacgac
accgcgaccggcacggacgtgaccgcgcgcacgcgccgccgcgcgagccgcccggccggg
ccgccgccggacgtggaggaggcgcccgcggcgcccgcccaggcggcgccgcccgcctcg
gcggaggagccctcgcccgcccaggagccggagccggcgcccaggcgcagggtccgccgg
gcggccgcgtccgagcccgcgcccgccgcggagggggagcccgctcccggcgacgaggcc
gcgtcccagcccgcgtcccagcccgcttccgaggcgccggcgaagcggacccgcacccgg
acccgcacccgggcggcgcgggccgccgaggacgagggcggcaccgcggagaccgccgag
cccgtcccgatgaccggcgcggagacctcgccggaggaggccccggcggagaagacctcc
gcccggacccggacccgccgccgcgcggccgccgccgcgcccgtcacccccgacgagccg
gacgtcccgtccgtgcccggggtgcccggggtccccggagccgaggccggccaggtgtcc
gaggccgagcccgcgggcggcgtcgtgcccggcgtgacgttccagccgcccatggtcgtc
ttccagccgccgcagcccaaggccgagacgcccacccgccccaaggacgagccgaagtcc
gccgagcccgccgccgaggaccgtgacgagcacggcccggcctcggccgaggacgacgac
gaggacgacggcaggccctcgcgccggcgccgccgccggggcggccgtggccgcggccgc
ggcaaggacggcgtcgacgacgaggcgcaggccgaggacgccgccgaggccgaggagccc
aaggaggccaaggaggccaaggacgagcagcccgccaaggcgggcaaggcgaggtccgcc
aagaccaaggccaaggagaaggccgccaaggccgagcaggacgacgcgcaggacgcgggc
ggcgaggacgacgacgaccagggcggcacgagccgccgccggcgccgccgcaggcgccgc
tccgggggcgacggcgagggcggcaccgacgatccgccgaacaccgtcgtgcacgtgcgc
gatgcccgcgccgtggaggacgaggtccagtccgtgcggggctcgacgcggctggaggcc
aagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcccgccggtgatcacc
gaggccgagttcctggcgcgccgcgaggccgtcgagcgggtgatggtggtgcggcaggag
ggcgagcgcacgcagatcgccgtgctggaggacggcgtcctcgtcgagcactacgtcaac
cgcgccacccaccagtcctacgtcgggaacgtctacctcggcaaggtccagaacgtgctg
ccgtcgatggaggcggcgttcgtcgacatcggcaagggccgcaacgccgtcctgtacgcg
ggcgaggtcaactgggacgtcgccgggctggagggccagccccgccggatcgagtcggcg
ctgaagtccggccagtcggtgctcgtccaggtcaccaaggacccgctcgggcacaagggc
gcccgcctgaccagccaggtctcgctgcccggccgctacctggtgtacgtgccggacggc
tcgatgaccggcatcagccgcaagctgcccgacaaggagcgcagccggctcaagtcgatc
ctcaagagggtcatgcccgagaacgcgggcgtgatcgtccgcacggccgccgaaggcgcc
accgaggaggagctggcccgggacgtgtcgcggctcgccgcgcagtgggacaacatccag
aagaaggtcaagaccgcctcggcgccgtcgctgctgtacggcgagccggacctgacgatc
cgggtcgtccgcgacatcttcaacgaggacttctccaagctcgtcgtgtccggcggcgac
gcctgggacaccgtctcggagtacgtggagtacgtcgcgccgcacctcgccgagcgcgtc
gagcgctgggacggcgaccaggacgtcctcggcgcgttccgcgtcgacgagcagatcgcc
aaggcgctggaccgcaaggtctggctgccctcgggcggctcgctggtgatcgaccgcacc
gaggcgatgacggtcatcgacgtcaacaccgggaagttcaccgggcagggcggcaacctg
gaggagaccgtcacccgcaacaacctggaggcggccgaggagatcgtccgccagctccgg
ctgcgcgacatcggcggcatcgtcgtgatcgacttcatcgacatggtgctggagagcaac
cgcgacctggtgctgcgccggctcgtcgagtgcctgtcgagggaccgtaccaagcaccag
gtggccgaggtgacctcgctgggcctcgtccagatgacccgcaagcgggtcgggcagggc
ctgctggaggcgttctcggagacctgcgagtcctgcaacgggcgcggcatccacgtccac
ctgacccccgtcgagccgaagccggacaaggcgtcggccaaggagggcggacggcgccgc
aagcgcaagggcgaggtcgagcgggccgtcgaggagaagctggcccagcacgagaccacg
cccaaggagacgtccgagccggagccccgcgacgagccggagcccgcgcgcccggcgcgg
tcgagggccaagaagtccggtcccgccaagcggcccgcgggcccgccgccggacgtcgac
gccgacgaggcgccggtgcaggccgcggtggaggccgccgaggcagcggccgaggtcgcc
ggcacctcgccgggcgccctggccgccgacgagccggtcgccgccgacgatgccgacggt
gccgaggcgcccgccgcgggcaccgccccggccggcaccgctcccgccgacgccgccccg
gcggcccccgccgaggcgaacggcgccgaggcgagcggcgcgcaggaccacggcgccgag
ccgggcgccgcggagtccaacgggtccgcgccgtccgccgaggcgaacggggccgccgcc
gtggacgccgacgagcccggcgccgtccggcgccgccgcgtccgccggccgcgtgccgcc
gccaaggcggccgattccgactga
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