Actinomadura graeca: AGRA3207_004857
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Entry
AGRA3207_004857 CDS
T07938
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agra
Actinomadura graeca
Pathway
agra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AGRA3207_004857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agra03021
]
AGRA3207_004857
03400 DNA repair and recombination proteins [BR:
agra03400
]
AGRA3207_004857
Enzymes [BR:
agra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AGRA3207_004857
Transcription machinery [BR:
agra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AGRA3207_004857
DNA repair and recombination proteins [BR:
agra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AGRA3207_004857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
TarH
Laminin_II
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QXJ23667
LinkDB
All DBs
Position
5485094..5488966
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITSVDAERRDRDLPTLEAHISVERQQIEQARDAQVEARQQKLEGD
LAELEEAGAKADQKRKVRDGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YREMRDRFGKYFEGGMGAAAIQARLQNFDLDAEAEKLRDIIRTGKGQKKARALKRLKVVS
AFLNTRNSPLGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGKPVTMPTQDMVIGLYWLTTQKDGAEGEGR
AFGGIAEAIMAYDRGELDLQAKIHIRLKDVPPPRGWMAPEGYEPGQPYRLETTLGRAMFN
ETLPDDFPFVDDEIGKKQLSAIVNELAETYPKVAVANALDALKSTGFHWATRSGVTIAID
DVITPPNKQDILGGYEQRADKVQREFNRGLITDDERKQELIEIWNHATADVAKDMEQAFP
KANPIWMMIQSGARGNPLQLRQIAGMRGLVSNPKGETIPRPIKSSFREGLSVVEYFISTH
GARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDRTIPFEVAERAADGSLVKLA
TTETSLVGRTIAEDVEVDGTIIFPADTDLSDAVVTRLVEAGVDRVRTRSALVCEAKIGVC
AACYGRSLATGKRVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITHGLPRVQEL
FEARIPKGVAPISEVAGRVKIDETEKARKVVVVPDDGSDEIAYPVPMRSRLLVKEGEHVD
VGQQLIAGAINPHEVLRILGPRAVQLHLVHEVQEVYRSQGVSIHDKHIEIIVRQMLKRVN
ILESGDTDLLPGDLVERPIFEETNRNVVAEGGVPAAGRPVLMGITKASLATESWLSAASF
QETTRVLTEAAMHAKSDPLLGLKENVIIGKLIPAGTGMPQYRNVRVEPTEEAKAAVYSVG
SYDDGAEYAFGQGSGEAVPLEEYDFGQYNR
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgacgtcaacttcttcgacgagctacgcatcggcctggcgaccgctgacgacatc
cgccagtggtcccacggcgaggtcaagaagccggagacgatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgcgactgggagtgc
tactgcgggaagtacaagcgcgtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcccgcctcggctacctgctggacctg
gccccgaaggatctcgaaaagatcatctacttcgcggcctacatgatcaccagcgtggac
gccgagcgccgcgaccgcgacctgccgacgctggaggcccacatctccgtggagcgccag
cagatcgagcaggcccgcgacgcgcaggtcgaggcccgccagcagaagctggagggcgac
ctggcggagctggaggaggccggcgcgaaggccgaccagaagcgcaaggtgcgcgacggc
gccgagcgggagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtctggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagatgcgcgaccggttcggcaagtacttcgagggcggcatgggcgccgcggcc
atccaggcccggctccagaacttcgacctcgacgccgaggccgagaagctgcgcgacatc
atccgcaccggcaagggccagaagaaggcccgcgccctcaagcggctgaaggtcgtctcg
gcgttcctcaacacccgcaacagcccgctcggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgcccgatggtgcagctggacggcgggcggttcgccacgtccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctcaagcgcctgctcgacctg
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggccgggcaaccgcccgctgaag
tcgctctcggacatgctcaagggcaagcagggccggttccggcagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgcgcccgt
ccggtcgtgtgggacgtgctggaagaggtcatcaccgagcacccggtgctgctcaaccgc
gcgccgaccctgcaccgtctcggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgaccaacaacatcctgaagccgtcggacggcaagcccgtcaccatgcccacccaggac
atggtgatcggcctgtactggctgaccacgcagaaggacggcgccgagggcgagggccgg
gcgttcggcggcatcgccgaggcgatcatggcctacgaccggggcgagctggacctccag
gcgaagatccacattcggctgaaggacgtcccgccgccgcgcggctggatggcgcccgag
ggctacgagcccggccagccgtaccggctggagacgacgctcggccgcgcgatgttcaac
gagacgctgccggacgacttcccgttcgtcgacgacgagatcggcaagaagcagctctcg
gcgatcgtcaacgagctggcggagacctacccgaaggtggccgtcgccaacgcgctggac
gcgctgaagagcaccgggttccactgggcgacccggtccggcgtgaccatcgcgatcgac
gacgtcatcaccccgcccaacaagcaggacatcctgggcgggtacgagcagcgcgccgac
aaggtccagcgcgagttcaaccgcggtctgatcaccgatgacgagcgcaagcaggagctc
atcgagatctggaaccacgcgaccgcggacgtcgccaaggacatggagcaggcgttcccg
aaggccaacccgatctggatgatgatccagtcgggcgcccgcggcaacccgctccagctg
cggcagatcgccgggatgcgcggcctggtctccaaccccaagggcgagaccatcccgcgt
ccgatcaagtcgtcgttccgcgaggggctgtcggtcgtcgagtacttcatctcgacgcac
ggcgcccgcaagggcctcgccgacaccgcgctgcgcaccgccgactcgggctacctgacc
cggcgcctggtggacgtcgcgcaggacgtcatcgtccgcgaggaggactgcggcaccgac
cgcacgatccccttcgaggtcgccgagcgcgccgccgacgggtcgctggtcaagctggcc
accacggagaccagcctggtcggccggaccatcgccgaggacgtcgaggtcgacgggacg
atcatcttcccggccgacaccgacctgtccgacgcggtcgtgacgcgcctggtcgaggcc
ggtgtggaccgtgtccgcacccgcagcgccctggtctgcgaggccaagatcggcgtctgc
gccgcctgctacggccgttccctggccaccggcaagcgggtggacgtcggcgaggccgtc
ggcatcatcgccgcgcagtccatcggcgagcccggcacgcagctgaccatgcgcaccttc
cacaccggcggtgtcgccggcggtgacatcacgcacggcctgccgcgcgtccaggagctg
ttcgaggcccgcatccccaagggtgtggccccgatcagcgaggtcgccggacgcgtcaag
atcgacgagacggagaaggcgcgcaaggtcgtcgtcgtccccgacgacggctccgacgag
atcgcctacccggtgccgatgcgctcccgcctcctggtcaaggagggcgagcacgtcgac
gtgggccagcagctcatcgcgggtgccatcaacccgcacgaggtgctgcgcatcctcggc
ccccgcgccgtgcagctccacctggtccacgaggtccaggaggtctaccggtcgcagggc
gtgtcgatccacgacaagcacatcgagatcatcgtccgccagatgctgaagcgggtgaac
atcctggagtcgggcgacaccgacctgctcccgggtgacctcgtcgagcgtccgatcttc
gaggagacgaaccggaacgtcgtggccgagggcggggtccccgccgccggccgccccgtc
ctgatgggcatcaccaaggcctcgctcgcgaccgagtcgtggctgtcggcggcgtccttc
caggagacgacccgggtcctcaccgaggccgcgatgcacgccaagagcgacccgctgctc
ggcctcaaggagaacgtcatcatcggcaagctcatcccggccggtaccggcatgccgcag
taccgcaacgtccgggtggagcccaccgaggaggcgaaggcggcggtgtactccgtcggc
tcctacgacgacggcgccgagtacgcgttcggccagggttccggcgaagccgtccccctg
gaggagtacgacttcggccagtacaaccggtag
DBGET
integrated database retrieval system
