Actinomadura graeca: AGRA3207_005943
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Entry
AGRA3207_005943 CDS
T07938
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
agra
Actinomadura graeca
Pathway
agra03420
Nucleotide excision repair
agra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AGRA3207_005943
03430 Mismatch repair
AGRA3207_005943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agra03400
]
AGRA3207_005943
Enzymes [BR:
agra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AGRA3207_005943
DNA repair and recombination proteins [BR:
agra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AGRA3207_005943
MMR (mismatch excision repair)
Other MMR factors
AGRA3207_005943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QXJ24589
LinkDB
All DBs
Position
6734469..6737876
Genome browser
AA seq
1135 aa
AA seq
DB search
MITPGELARLLEIPAPTDEQARVIEAPLAPLAVIAGAGSGKSETMAARVVWLVANGFVRP
ERVLGLTFTRKAAAELGVRVRKRLDKLREVLPGDELERLGGETLFDGEPMVSTYHSYAAR
LFGDHALREALEPTMRLISPAVAWQICSRVVDAYNGPMDRVEWQPDTVTKAVMELSGDLS
EHLRTPEDVRKVGRWLDERFASLKKALKPQRDILAKHAVREQLMPLVEAYGRAKAEREVI
DHGDQMALAARIAFKHPEVGMFERSRFSVVLLDEYQDTSQAQLVLLTSLFSGGHPVTAVG
DPCQSIYGWRGASAGNLLRFAHDFPAQPAVAGRRPVPAPVVQLSRSFRNGERILDAAATI
QEELRAETAAVPRLVPGAGRDGRGRVECALFTTVEEEADRIAARVAGLIAADPGTAPDGG
VQAEPLRYSDIAVLARKRSQFPLVRRALEARGIPVEVVGLGGLLTVPEVQDVVATLRAMH
DPTAGASLARLLTGPRWRLGPRDLVALGRRARTLAQEAARDVTPPAAPAPSAEAPPPGDA
TSDAVSGDTPGDGPSEGGAGGDPLRQLVSELNQETGSLVDALDDLGDPAAYSPEGFGRLR
RLRDEMRGLRGQVGLPLPDLVTEVERTLGLDIEVAARSGLDPVTARADLDAFVDAAATFA
GDAEDPTLGAFLAYLKAAESEEFGLEAGRVGETDSVKLLTVHASKGLEWPVVVVPGLSYV
PQKNGGPAKGSVFPSPPQNATRWTANPRVLPFMLRGDRADLPPLNGLEKDDLAAFEQACA
ERDLREERRLAYVAVTRASALLITTGYWWGASGRPLGPSPFLEEVRAVCVAGAGTVAVWA
DPPGEDAANPLLADPDEARWPAGPGERGGATARERYAAVVEGARMVEDAMAGRARHWAGN
DGLSGADRGRMTAWARDVELLLAERDRGRGGDGLLVELPANLSVSSLVSLARDPAALARQ
IRRPMPRPPAPYARRGTAFHAWLEGRWGQQRLLDPDELPGAADEGAADDAQLARLRERFE
ESEWASREPLDIEVPFETVIGDRLVRGRMDAVFRTRDGGYEIVDWKTGAPPREDDAGPAS
VQLAAYRLAWAELAGVEIGQVSAAFHYVGANVTVRPADLLDAAGLAALLDGIPAG
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacgcccggggagctggcccgcctgctggagatccccgcgcccaccgacgagcag
gcgcgggtcatcgaggcgccgctggcgccgctggcggtgatcgccggcgccgggtcgggc
aagagcgagacgatggccgcgcgggtggtgtggctggtcgcgaacgggttcgtgcgcccc
gagcgggtcctcgggctgacgttcacccgcaaggccgcggcggagctgggcgtccgcgtc
cgcaaacggctcgacaagctccgcgaggtcctgcccggcgacgagctggagcggctcggc
ggcgagaccctgttcgacggcgagccgatggtctccacctaccactcctacgccgcgcgg
ctcttcggcgaccacgccctgcgcgaggcgctggaaccgacgatgcggctgatctccccg
gccgtcgcctggcagatctgctcccgcgtcgtggacgcctacaacgggcccatggaccgc
gtcgaatggcagcccgacaccgtcaccaaggccgtcatggagctgtccggcgacctgtcg
gagcacctgcgcacgcccgaggacgtccgcaaggtcgggcggtggctggacgagcggttc
gcgtcgctgaagaaggcgctcaagccgcagcgcgacatcctcgccaagcacgccgtccgc
gagcagctcatgccgctcgtcgaggcgtacgggcgcgccaaggccgagcgggaggtcatc
gaccacggcgaccagatggccctcgccgcgcggatcgccttcaagcaccccgaggtgggg
atgttcgagcggtcgcgcttctccgtcgtcctgctcgacgagtaccaggacaccagccag
gcgcagctcgtgctgctgacgtcgctgttctccggcgggcacccggtgacggcggtcggc
gacccctgccagtccatctacgggtggcgcggcgcgagcgccgggaacctgctgcggttc
gcccacgacttccccgcgcagcccgccgtcgccgggcgccgtcccgtcccggcgcccgtc
gtccagctcagccgctcgttccgcaacggcgagcggatcctggacgcggcggccacgatc
caggaggagctccgggcggagacggcggcggtgccgcggctcgtccccggcgccggacgc
gacgggcgcggccgggtcgagtgcgccctgttcacgaccgtcgaggaggaggccgaccgg
atcgccgcgcgggtcgccgggctgatcgccgccgatcccgggaccgccccggacggaggc
gtgcaggcggagccgctccggtattccgacatcgccgtcctggcccgcaagcggtcgcag
ttcccgctcgtgcggcgggcgctggaggcgcgcggcatcccggtggaggtcgtcggcctc
ggcgggctgctgaccgtcccggaggtgcaggacgtcgtcgcgaccctgcgcgccatgcac
gacccgacggccggcgcgtccctcgcgcgcctgctcaccgggccccgctggcggctcggc
ccccgcgacctcgtcgcactgggccggcgcgcgcggacgctcgcccaggaggccgcccgc
gacgtgacccctcccgcggcgccggcgccgtccgccgaggcacctccgcccggcgacgcc
acgtccgatgccgtctcgggggacacgcccggtgacggcccgtccgagggcggggcgggc
ggcgacccgctgcggcagctcgtcagcgagctgaaccaggagaccggcagcctggtggac
gcgctggacgacctcggcgaccccgccgcctactcgcccgagggcttcggacggctgcgg
cggctccgcgacgagatgcggggactgcggggccaggtggggctgccgctgcccgacctg
gtcaccgaggtggagcggacgctcgggctggacatcgaggtcgccgcccggtccggcctc
gacccggtgacagcgcgcgccgacctggacgccttcgtcgacgccgccgccaccttcgcc
ggggacgccgaggaccccacgctcggcgcgttcctcgcctacctcaaggccgccgagtcc
gaggagttcgggctggaggccgggcgggttggcgagaccgacagcgtcaagctcctcacc
gtccacgcgtccaaggggctggagtggccggtggtcgtcgtcccggggctgtcgtacgtg
ccgcagaagaacggcggccccgcgaagggctcggtgttcccgtcgccgccgcagaacgcc
acccgctggaccgcgaacccgcgcgtcctgccgttcatgctgcgcggcgaccgcgccgac
ctccccccgctgaacggcctggagaaggacgacctcgccgcgttcgagcaggcgtgcgcg
gagcgggacctgcgcgaggagcggcggctcgcctacgtcgcggtgacccgcgcgtccgcc
ctgctcatcaccaccgggtactggtggggcgcgtcgggccgcccgctcggcccctcgccg
ttcctggaggaggtgcgggcggtgtgcgtggcgggcgcggggaccgtcgcggtgtgggcc
gacccgcccggggaggacgccgccaacccgctgctcgccgaccccgacgaggcgcggtgg
cccgccggcccgggggagcggggcggcgcgaccgcgcgggagcggtacgccgccgtcgtc
gagggcgcccgcatggtcgaggacgcgatggccgggcgggcgcggcactgggcgggcaac
gacgggctgtccggcgccgaccgcggccgcatgacggcgtgggcccgcgacgtcgagctg
ctgctcgccgagcgggaccgaggccggggcggcgacgggctcctggtcgagctgcccgcg
aacctgtcggtgtcgtcgctggtgtcgctggcgcgggacccggcggcgctggcccgccag
atccgccggccgatgccgcgcccgcccgccccctacgcgcgccgcggcaccgcgttccac
gcctggctggagggccgctggggccagcagcgcctcctggaccccgacgagcttcccggc
gcggccgacgagggcgccgccgacgacgcgcaactggcgcggctgcgggagcggttcgag
gagtcggaatgggcgtcgcgggagcccctggacatcgaggtcccgttcgagaccgtcatc
ggcgaccggctggtccggggccggatggacgccgtcttccgcacccgggacggcgggtac
gagatcgtcgactggaagaccggcgccccgccccgggaggacgacgccgggcccgcgtcc
gtccagctcgcggcctaccggctggcctgggcggaactggcgggggtggagatcgggcag
gtcagcgcggcgttccactacgtgggcgcgaacgtcaccgtccgtcccgccgacctgctg
gacgcggcgggcctcgccgcgctgctcgacggcatcccggccggctga
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