KEGG   Agrobacterium sp. CGMCC 11546: GSF67_05100
Entry
GSF67_05100       CDS       T10431                                 
Name
(GenBank) MBL fold metallo-hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
agrc  Agrobacterium sp. CGMCC 11546
Pathway
agrc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agrc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSF67_05100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agrc03019]
    GSF67_05100
Messenger RNA biogenesis [BR:agrc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GSF67_05100
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 RNase_J_C Lactamase_B RMMBL Anti-Pycsar_Apyc1 Regulator_TrmB
Other DBs
NCBI-ProteinID: QKW96520
LinkDB
Position
1:982747..984414
AA seq 555 aa
MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS
YIVEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
SWGKKPIVTVFVTKV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggctaaacaggacgaactggtctttgtgccgcttggcggcgtgggtgaaatcggcatg
aatctggcgctttacggttatgggccggaaagtaagcgccaatggatcatggtggattgc
ggcgtgactttcgccggcccggacctgccgggcgtcgatctggttctgcctgacatcagc
tacatcgtcgagcagaaaaagaacctcaagggcatcatcatcacccacgcccatgaggac
cattatggtgcaatgaatgatctctggcccggtctcaacgtgccggtctatgcctcgcct
ttcaccgccggcatgctggaagccaagcgcgcctatgagggcacccgtgccgaaattccg
gtgacgatcttcaaggccggcgaccgcatcaatgtcgggccgttcgaaatcgaggctgtt
ggcgtcaaccactccattccggagccgatgtcgctcgtcattcgcacgccgcttggcaat
gtcatccacaccggcgactggaagatcgatgaggccccgtcgcttgggccgttgacggat
gaggcgcgtttccgcgcgatcggcgaagagggcgtgctggcgctgatgtgcgacagtacc
aacgcgctgcgcgacggcgtgtcgccctccgagcatgaggtttccgaaggcctgcgccag
atcatcgaaagtgccgaaggccgcgtggccgtcaccaccttctcgtccaatgtcgggcgc
atccgctcgattgcgcaggcggcggaagcggccggccgcgaagtattgctgctcggctct
tcgctgaagcgtgtcgtgaatgtctcgcaggatcttggcatcatggaaggcatcaagccg
ttccttgccgaagacgaatatggctatattccgcgcgaccgtgtggtggtgatcctgacc
ggttcgcagggcgaaccgcgcgcagcgctcgccaagctttctcgcgacgagatgcgcaat
gtggcgctcgcctcgggagataccgtcgtcttttcctcacgcgccattcccggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatagagcagggcgttcacatcgtgaccgac
aatgaagctctggtgcatgtctcgggccatccccgccgcaatgagcttctgcggatgtat
gagtggacgaagccgcagatcctggtgccggtgcatggcgaagcggcgcatcttgtggcg
cagaaggaactggcagaacaggccggtatttctcaggtgccgaaggtgcgcaacggtaat
gttctgcgcctggcacccggcccggcggaagtcatcaatgatgtaccgcatggccgcgtt
tttaaggacggtaatctcgtcggcgatatggacgagatgggcatcagcaatcgccgcaaa
ctgtccttcgccggccatgttgccgttaacgtcgtgctggacagccgttatgacttcctc
ggcgatcccgatgtcgtgccgttcggcctgccggaattcgatgacgaggacgaggcgatg
gaggacacgctttatgacgccgtcctcggcgccgtcgaaagcattccgcgcgcccgccgc
aaggatctggcacttctgcgcgaatcggtgcgccgcgccgtgcgagccgccgccaaccag
agctggggcaagaagccgatcgtcacagttttcgtaacgaaggtctga

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