Agrobacterium sp. CGMCC 11546: GSF67_05100
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Entry
GSF67_05100 CDS
T10431
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
agrc Agrobacterium sp. CGMCC 11546
Pathway
agrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSF67_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrc03019
]
GSF67_05100
Messenger RNA biogenesis [BR:
agrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSF67_05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
QKW96520
LinkDB
All DBs
Position
1:982747..984414
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AA seq
555 aa
AA seq
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MAKQDELVFVPLGGVGEIGMNLALYGYGPESKRQWIMVDCGVTFAGPDLPGVDLVLPDIS
YIVEQKKNLKGIIITHAHEDHYGAMNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
EARFRAIGEEGVLALMCDSTNALRDGVSPSEHEVSEGLRQIIESAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEYGYIPRDRVVVILT
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQILVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
VLRLAPGPAEVINDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
SWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacaggacgaactggtctttgtgccgcttggcggcgtgggtgaaatcggcatg
aatctggcgctttacggttatgggccggaaagtaagcgccaatggatcatggtggattgc
ggcgtgactttcgccggcccggacctgccgggcgtcgatctggttctgcctgacatcagc
tacatcgtcgagcagaaaaagaacctcaagggcatcatcatcacccacgcccatgaggac
cattatggtgcaatgaatgatctctggcccggtctcaacgtgccggtctatgcctcgcct
ttcaccgccggcatgctggaagccaagcgcgcctatgagggcacccgtgccgaaattccg
gtgacgatcttcaaggccggcgaccgcatcaatgtcgggccgttcgaaatcgaggctgtt
ggcgtcaaccactccattccggagccgatgtcgctcgtcattcgcacgccgcttggcaat
gtcatccacaccggcgactggaagatcgatgaggccccgtcgcttgggccgttgacggat
gaggcgcgtttccgcgcgatcggcgaagagggcgtgctggcgctgatgtgcgacagtacc
aacgcgctgcgcgacggcgtgtcgccctccgagcatgaggtttccgaaggcctgcgccag
atcatcgaaagtgccgaaggccgcgtggccgtcaccaccttctcgtccaatgtcgggcgc
atccgctcgattgcgcaggcggcggaagcggccggccgcgaagtattgctgctcggctct
tcgctgaagcgtgtcgtgaatgtctcgcaggatcttggcatcatggaaggcatcaagccg
ttccttgccgaagacgaatatggctatattccgcgcgaccgtgtggtggtgatcctgacc
ggttcgcagggcgaaccgcgcgcagcgctcgccaagctttctcgcgacgagatgcgcaat
gtggcgctcgcctcgggagataccgtcgtcttttcctcacgcgccattcccggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatagagcagggcgttcacatcgtgaccgac
aatgaagctctggtgcatgtctcgggccatccccgccgcaatgagcttctgcggatgtat
gagtggacgaagccgcagatcctggtgccggtgcatggcgaagcggcgcatcttgtggcg
cagaaggaactggcagaacaggccggtatttctcaggtgccgaaggtgcgcaacggtaat
gttctgcgcctggcacccggcccggcggaagtcatcaatgatgtaccgcatggccgcgtt
tttaaggacggtaatctcgtcggcgatatggacgagatgggcatcagcaatcgccgcaaa
ctgtccttcgccggccatgttgccgttaacgtcgtgctggacagccgttatgacttcctc
ggcgatcccgatgtcgtgccgttcggcctgccggaattcgatgacgaggacgaggcgatg
gaggacacgctttatgacgccgtcctcggcgccgtcgaaagcattccgcgcgcccgccgc
aaggatctggcacttctgcgcgaatcggtgcgccgcgccgtgcgagccgccgccaaccag
agctggggcaagaagccgatcgtcacagttttcgtaacgaaggtctga
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