Agrobacterium sp. CGMCC 11546: GSF67_05135
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Entry
GSF67_05135 CDS
T10431
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
agrc Agrobacterium sp. CGMCC 11546
Pathway
agrc03030
DNA replication
agrc03430
Mismatch repair
agrc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
agrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSF67_05135 (dnaE)
03430 Mismatch repair
GSF67_05135 (dnaE)
03440 Homologous recombination
GSF67_05135 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
agrc03032
]
GSF67_05135 (dnaE)
03400 DNA repair and recombination proteins [BR:
agrc03400
]
GSF67_05135 (dnaE)
Enzymes [BR:
agrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GSF67_05135 (dnaE)
DNA replication proteins [BR:
agrc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GSF67_05135 (dnaE)
DNA repair and recombination proteins [BR:
agrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GSF67_05135 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QKW96525
LinkDB
All DBs
Position
1:989514..993017
Genome browser
AA seq
1167 aa
AA seq
DB search
MGDTVVRGETSGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYER
LVDLVSRAYLDGEGGSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKER
LLTLKSLFGDRLYIELQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGP
ILPRFTGASDDPEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVI
SRMKFPGYFLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIKVDLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLIN
AGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWL
PSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGK
QERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERPEGIGL
RIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVE
LTEKYRISPEIAAALRSAPGVVDVELV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatacggttgtgcgtggagagacctctggcgaaacgctgaagacccccggtttc
gtccatcttcgggttcattccgcttattccctgcttgagggggcgttgcccctcaagaag
atcatgtccaaggctgttggggacggccagccggccattgccattacagataccaacaac
ctcttcgtcgcgctggaattttccgaaaaggcgcgggacgaaggtctgcagccgattatc
ggctgccaattgtccatcgacatgcaggatgcggcggaggatcgccgcaaccacaacagc
catctgcagaaacttcccgccatcgttctccttgccgccaatgcggaaggatatgagcgg
ctggtggatctcgtcagccgtgcctatctggacggtgaggggggcagccattccgtgcac
attacccgtgcatggcttgaggaagcctccaatgccggtctcattgcgctgacaggcgct
tccggcggccccgtcgatatggcgctgaaggaaggccacgccgcgcaggcgaaagagcgg
ctgctgacgctgaagtcacttttcggtgacaggctttatatcgaattgcagcgccagtcc
ggttacgaccgctcccatgagcggcgcttgattggtctcgcttatgaacacgatatcccc
ctcgttgccaccaacgaggcgtttttcccgtccaaggcggactatgaggcacatgatgca
ctgatggcggtggcacataacgccatcgtttccgatgacagccggttccgcctgacaccc
gatcattacctcaagagccgtgacgagatgacggcgctgtttgccgatcttcccgaggca
ctggagaacaccgtcgagatcgcgctccgttgctcctatgtgctgaaaaagcgcgggccg
atcctgccgcgtttcaccggcgccagcgacgatccggaagcggcggaacgcgccgaaacc
gaggaactgcgccgacaggctgtcgaggggctggatcagcggctttccgcgcttggcatg
gcgcccggttatacggaacaggattatcgcgagagattggatttcgaactcggcgtgatc
tcgcgcatgaagtttcccggttacttcctgatcgttgccgacttcatcaagtgggccaag
cagcaggatattccggtcggcccgggccgtggttcgggtgccggctctctcgtcgcctat
gcgctgaccattaccgatgtcgatccgctgcgcttctcgctgctgttcgaacgctttctc
aatcccgaacgcgtttcgatgcccgacttcgatatcgacttttgccaggatcgccgcgaa
gaggtgatccgctacgttcagcgcaaatatgggcgcgagcaggtggcgcagatcatcacc
ttcggttcgttgcaggcgcgcgcggccctgcgcgacgtcggccgtgtgctggaaatgccc
tatggccaggtggacaagatctgcaagctggtgcccaacaacccggccaacccgacgccg
ctgtccaaggcgatcgaggaggagccgcgcctgcaggaagaggcggacaaggagccggtc
gtcgcccgcctgctggacatcgcccagaagatcgaagggctttaccgccacgcctccacc
catgccgccggtatcgtcatcggcgaccgcccgctctccaagctggtgccgatgtatcgc
gatccgcgatccgatatgcccgttacccagttcaacatgaaatgggtggaaagcgctggc
ctcgtcaaatttgactttctcggcctgaagacgctgacggtgctgaaagtggccgtcgat
tttgttgccaagcgcggcatcaaggtcgatctcgcggccattccgcttgaggacgccaaa
acctacgagatgttgtcgcgtggtgaaaccatcggcgtcttccaggtggaaagtgcgggc
atgcgcaaggcgctgatcggcatgcgcccggactgcatcgaggacatcatcgcgctggtg
gcgctttaccgccccggcccgatggaaaacattccggtctataatgcccgcaaacatggc
gaggaggagctggaatcgatccatccgaccatcgaccatctcctcaaggaaacacagggc
gttatcgtctatcaggaacaggtgatgcagatcgcccaggttctttccggttattcgctc
ggcgaagccgatcttctgcgccgtgccatgggcaagaagatcaaggaggagatggaccag
cagcgcgagcgtttcgtcgatggcgccattaaaaacggtgtttcgaaaccgcaggcgaac
accatcttcgaccttctggcgaaattcgccaattacggcttcaacaagagccatgctgca
gcctacgccatcgtgtcctaccagaccgcctatatgaaggcgcattatccggtggagttc
ctcgcggcctccatgacactcgatatggccaacacggaaaagctgaacgatttccgtcag
gatgccggtcgtctcggcatcgaggtcgtcgcaccctcggtacagacctccttccgccag
tttgagacgggcgaaaaccgcatctattattcgctggccgccatcaagggcgtgggtgag
ggggcggtggaacacatcgtccaggtgcgtggcgaaaagccatttacgagccttgaggat
ttctgcctgcgcatcgatcccaagcagatcaaccggcgtgtgctggaaagcctgatcaat
gccggcgctttcgattgtttcggccgtgaccgcgccgagctgatcggcggactggaccgc
atcatcggttatgcccaaatggcgcagaacaaccgcaccatcggtcagtcggacatgttc
ggttccggcggcgggacaggcccggaaaagctcattttgccggcgtttcaatcctggctg
ccatcggaaaagctgatacgcgaatatcaggtgctcggtttttacctcacggcccatccg
ctggatacttaccggccactgctggagaaattacgggtgcagaatttcgccgatttttcc
gcggcggttaagcagggcgcgtccaccgtcgggcgtctggccggtaccgtcacgggcaag
caggagcgtaagacccgtaccggcaacaagatgggcatcgttactttttccgatgcatcg
ggccagtatgaggcggtgctgttttccgaagggcttgcccagttccgtgatctgctcgag
gtcggcaaatcgctggtcatcaacgtccaggcggaagaacgcccggaaggcatcggtctg
cgtatccagacggctcagtcgctggaagaaaaatccgtgcagatgcagaaggcgcttcgg
gtttatgtacgcgattccggcccgctgaagacggtggcccgccatctcaacacaaagggc
gacggatcggtttatttcatcgtcatcaaggatgagggcagtcgtgagatcgaggtggag
ctgacggagaaataccgcatttcacctgaaatcgccgccgcgttacgatccgcacccggc
gtcgttgatgtggaactggtgtaa
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