Agrobacterium sp. CGMCC 11546: GSF67_11160
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Entry
GSF67_11160 CDS
T10431
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
agrc Agrobacterium sp. CGMCC 11546
Pathway
agrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSF67_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrc03019
]
GSF67_11160
Enzymes [BR:
agrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSF67_11160
Messenger RNA biogenesis [BR:
agrc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GSF67_11160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
CMS1
AAA_19
Flavi_DEAD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QKW97600
LinkDB
All DBs
Position
1:2153264..2154772
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AA seq
502 aa
AA seq
DB search
MSLFWRPERQYILTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQT
GTGKTAAFGLPIIEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQ
VVGGASINKQQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIH
DLRKISRMVPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVA
GKNDKTDLLKKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERA
LKGFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIA
FCAPDETRLLHDIEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGGR
HNGESRPSRNHAPRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKQRRPARKPGGSGANRH
APAGGNGQEKRASGNGNRGRNR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgttttggcgccccgaaaggcaatatatattgaccagttttagcgaactcggc
ctctccgaaaagattgtggccagtgttacccagcttggctatacgacccctacccccatt
caggcgaaagccattccgctgctgctcgaaggccgtgacctgatcggcctcgcacagacc
ggcaccggcaagacggccgctttcgggctgccgatcatcgaaatgctgatgaagcaggcg
gatcgtccggcaaatcgcaccacccgcacgctgatccttgcaccgacccgcgaactggtg
aaccagatcggcgacaacctgcgttccttcgtgaagaagacgccgttgcgcatcaaccag
gttgttggcggcgcgtcgatcaacaagcagcagcttcagctcgaaaagggcactgacatc
ctcgtggcgacccccggccgcctgctggacctcatcgcccgcaacgccatctcgctctcg
aaggtgacgtatctcgttctcgacgaagccgaccagatgctcgatctcggcttcatccat
gatctgcgcaagatttcccgcatggttccgcccaagcgccagacgctgctgttttcggcc
accatgccgaaggccatttccgagcttgccagcaacttcctgaccgacccgatcaaggtc
gaggtgacacctccgggcaaggctgccgacaaggtcgagcagtacgtgcatttcgtcgcc
ggcaagaacgacaagaccgatcttttgaagaagtcgctcaacgagaacccggatggccgc
tccatcgtgtttctgcgcaccaagcacggcgcggagaagctttacaagcatctcgaacat
atcggcttcaaggtcgcctccattcacggcaacaagagccagggccagcgcgagcgggca
ctgaagggcttcaaggatggtgagatcaaggttctggtcgcgaccgacgtcgctgcccgc
ggcatcgatatcccggccgtaacgcacgtcttcaactacgacctgccggaagtgccggat
gcttacgttcaccgcatcggccgtaccgcccgcgccggccgcgacggcatcgccatcgct
ttctgcgctccggacgaaacccgcctgctgcacgatatcgaaaagctgatgaagatcgat
atcccggttgcgtctggcgaacgtccggctggtcttgcaagcccgacacgccccaataac
aaccgtggcggtcgcaacaacaatggcggccagccgcgcggcccgcgtgaaggtggacgt
cacaacggcgaatcccgcccgtcccgcaaccacgcgccgcgtgatgcggacaacgatctg
gaagtaacctccgacttcaagcgcgttaagcaggctgaaggcgacgcaggccgtccggcc
ggcccgcgcaagcagcgccgccccgcccgcaagccaggcggcagcggcgccaaccgccac
gcacctgctggcggcaacggccaggaaaagcgtgcttccggcaacggcaatcgcggccgt
aaccgctaa
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