Agrobacterium sp. CGMCC 11546: GSF67_16430
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Entry
GSF67_16430 CDS
T10431
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agrc Agrobacterium sp. CGMCC 11546
Pathway
agrc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSF67_16430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agrc03400
]
GSF67_16430 (ligD)
Enzymes [BR:
agrc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GSF67_16430 (ligD)
DNA repair and recombination proteins [BR:
agrc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GSF67_16430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKW98780
LinkDB
All DBs
Position
2:complement(231732..234224)
Genome browser
AA seq
830 aa
AA seq
DB search
MGLQTYNAKRSFDKTPEPKGTKAEKPGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGSWQPIGDAGKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGSADILEERPESVKTGR
SVEEVAKKPEDTWNSKTVSKKAVASTSGQKQAHALPKGARKQALPSFVPPALATLKPKPP
EGSRWLHEIKFDGYRLQARVDHGKLQLLTRSGLDWTEKFGAAVAAALTALPAETLLIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GGPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYASGRKGEWVKSKCSMRQEFVI
GGYTVSSTSEHAIGSLALGVYENGKLRHVGRVGTGYSGEVAEMIFSRLKPLERKDSPFGD
KLTALARRDLRFVTPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREEKAVSDSN
APQSKIKFTHPDRLYWPDDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINRAIEQIKDPKDKGGEPLIRITDFDGMMALVQSAALEIHPWGATTVNWEKP
DMITMDIDPGEDVAWDAVIEAAQELKRRFEDVGLAAFVKTSGGKGLHVVSPLKPQAGWAP
VKAFAKAMAADMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAVAAYSTRARPGAAI
SAPLEWAELTAEIGPAHFTVNNIGARLSALKKDPWDGFFGAAEPLPKKSR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcagacctataacgccaagcgcagtttcgacaagacgcccgagcccaaaggc
acaaaggctgaaaaaccgggatcgagtttcgtcatccagaaacacgatgcccgccgcctg
cattacgattttcgccttgaaatggacggggtgctgaaaagctgggcggtgacgcgcggc
ccgagcctcgatcccgaagacaagcgccttgccgtgcacgtggaagaccatccactgagc
tacggcgattttgaaggcgtcatccccaagggacaatatggcggcggcaccgtgatcgtc
tgggatcgcggcagctggcagccgattggtgatgcgggaaaaggatatcgaaagggccat
ctggagttcgagctcgagggagagaagctgaaaggccgctggcatctggtgcgcatgcac
ggcaagcccggagagagccgggagaactggctgctgatcaagggtgacgatgaagaagcg
aggcataaaggtagtgctgatattctcgaggaaaggccggaatcggtaaagaccggccgc
agtgtcgaggaggtcgcaaaaaaaccggaagacacctggaattccaagacggtctcgaaa
aaggccgtcgcctcgacgtccggccagaaacaggcgcatgcgctgcccaaaggagcacgc
aaacaggccttgccatctttcgtgccgcccgcactcgccacgctgaagccgaaaccgccg
gagggatcacgctggctgcacgaaatcaaattcgatggttaccggctgcaggcgcgagtc
gatcacggtaaacttcagctgctgacccgcagcgggctggactggacggaaaaattcggc
gccgccgtagcggctgcactcacggcgttgccggcggaaacgcttttgatcgacggcgaa
attgtcgtggagcgcgacagcggcgcctctgacttttctgccttgcagcaggatctgagc
gaaggacgcagcgaccgtttcgtcttttacgcgtttgaccttctttatctcgatgggagc
gacctgcgcggtgctgccttgagtgagcgaaaggcgctgctggaaaagctgttgccagca
ggcggcccccatctccgctacagccaacattttgaggaaagtggcgcgctggtgttggac
catgcctgccggctcagcctcgaaggcgtgatttccaaggtcaagagcagcaaatatgcg
tccggccgcaagggcgaatgggtgaagtccaaatgttcgatgcggcaggaattcgttatt
ggcggttacaccgtctcctcgacctcggagcatgccatcggctcgctggctctcggagtc
tatgaaaacggcaagctgcgccatgtcggccgtgtcggtaccggttattccggcgaagtc
gcggagatgatattttctcgtctgaagccgctggaacgcaaggacagccccttcggcgac
aagctgaccgcgctcgcccgccgcgatctccgtttcgttacgccggaactggtggcagag
gtggagtttcgcgcttggtcgggagatggcaatctgcgtcacgcatccttccggggtcta
cgggaagacaagccggcaggagagatcgaacgcgaggagaaggccgtgtcggatagtaat
gcgccgcagtcgaagatcaagttcactcaccccgaccggctttactggccggatgacggc
gtgaccaaggaggggctggccgactattatgcgcaggtctggcggcatatggcgcctttt
gttgtcaaccggccgctggcgctgctgcgttgcccggaggggatagagggacaacggttt
ttccagaaacacgcctggcgcggcatcaacagggcgatcgagcagatcaaggatcccaag
gacaaggggggcgaaccgctgatccgcatcaccgatttcgacggcatgatggcgctcgtg
caatccgccgcgcttgaaatccacccttggggcgcgaccaccgtcaattgggaaaagccc
gacatgatcaccatggacattgaccccggcgaggatgtggcctgggacgcggtgatcgag
gcggcgcaagaactcaaacggcgcttcgaagatgtgggactggcagccttcgtcaagaca
tcaggcggcaaggggctgcatgtggtctcgccgctgaaaccacaggcgggctgggcgccg
gtcaaggccttcgccaaggccatggcggcggatatgtcgaaagccgagccggagaaatat
ctctccgtcgccaccaaggctaagcgtcagggtcgcatcttcatcgattatctgcgcaat
ggccggggcaataccgcggtcgcagcttattcgacgcgcgcccggcccggtgccgccatt
tccgcgcctctggaatgggcggaactgacggccgagatcggcccggcgcatttcaccgtc
aataatatcggtgcgcggctttcagccctgaaaaaagatccgtgggacggcttcttcggc
gctgcagaaccgttgccgaaaaagtcgcgctga
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