Anthonomus grandis grandis (boll weevil): 126734344
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Entry
126734344 CDS
T08911
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
agrg
Anthonomus grandis grandis (boll weevil)
Pathway
agrg03013
Nucleocytoplasmic transport
agrg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
agrg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126734344
03015 mRNA surveillance pathway
126734344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrg03019
]
126734344
Enzymes [BR:
agrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126734344
5.6.2.5 RNA 5'-3' helicase
126734344
Messenger RNA biogenesis [BR:
agrg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126734344
mRNA cycle factors
Common to processing body (P body) and stress granule
126734344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
AAA_16
nSTAND3
AAA_22
SRP54
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
126734344
NCBI-ProteinID:
XP_050293882
LinkDB
All DBs
Position
3:complement(26073142..26140555)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSECDFTDFTIPSQTQASQHDHAGPKVQGLQ
INNNLNTKIATTTQALGELQFEEEDEEFYNSKELPDFACKYCGIHEPNCVVMCNLCKKWF
CNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETILECYSCGVRNVFVLGFIPAKADSV
VVLLCRQPCAAQNSLKDMNWDQDQWKPLIADRCFLTWLVKIPSEQEQLRARQISAQQINK
LEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRLKESQ
TQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKTWAGVGHVIKVP
DNYGEDIGIELKNGSGAPTECTSNFVVDFIWKSTSFDRMQLALRKFAVDDASVSAYIYHR
LLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSAT
IVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKTDLKVVRLCAKSREAIDSPVSFLALHNQ
IRKMEGNTELQKLQQLKDETGELSSVDEKRYRMLKKLAEKELLEAADVICCTCVGAGDPR
LVRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSL
FERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERKLVNIDFPWPIQDR
PMFFLVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRAGIKPEQIGIITPYEGQRAYLV
QYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALT
RAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNMKESLIQFAKPKKLTNSEN
PGSHFMSTSMFDAREAMVPGSIFFRTSSTMNGSAGPFGNLGTTFQPNRPMQMDMFGRTHD
PISYIAPERAQAGLNLPVPMGMFMNMAHIPPRFYNQHQQAMQARQQQQNPRINSRRPPQR
QKGKLLSQDQTQPFSQSLQLTQGGMSQPGLSQPGFSLSQPGLSQAELSQDLYMAEYQSQM
DGLLSQDSTYQGDRSAFYQPSAQFSQPY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtatggcccgagctcccagacgctcacgtttttggatactgaggaa
gctgatctaataggggcggacacccagggctcggaatgtgattttaccgattttactata
ccctcgcagacccaggcatcgcagcatgatcatgcggggcccaaagtacagggcctgcag
attaataataatctgaacaccaaaattgccactaccactcaggctttaggagaactccag
tttgaagaggaagatgaagaattctacaatagcaaagagctcccagattttgcatgtaaa
tactgtggtatccatgagccaaactgtgttgttatgtgtaacctttgcaagaaatggttc
tgtaatggcaggggaaacacttctggaagccacattatcaaccatttggttagagctaag
cataaggaagttacactgcacagggatggtcctttaggagaaactattctggaatgctac
agctgtggtgtcagaaacgtttttgtgcttgggtttattcctgctaaagctgattctgta
gttgtcttactttgtaggcagccatgtgctgcacagaactccttaaaggatatgaattgg
gatcaagatcaatggaagcctcttattgctgaccgttgttttttaacatggcttgtcaaa
ataccatctgaacaagagcagcttagagcccgtcagatttcagctcagcagatcaataaa
ctggaggaattatggaaagagaatgtcgacgctacttttcaagatctagaaaagcctggt
gtagatgaagaaccacagcaagttcttctcagatatgaagatggctatcaatatcagaat
atttttggtccacttgtcaaactagaggcagactatgacaaaagattaaaagagtctcaa
acccaagaaaatattgaggttagatgggatgttggactgaataaaaagacaattgcttac
tttactttggccaaaactgatggagatatgaagcttatgcatggagatgaattaaggctt
agatatgtaggtgaaatgcataaaacctgggctggtgtaggacatgttattaaagttcca
gataattatggtgaagatattgggatagaactaaaaaatggctcaggagcccctactgaa
tgcactagtaattttgtggtggattttatatggaaaagtacaagttttgatagaatgcag
ctggcccttcgtaaattcgcagtggacgacgcatcagtgtctgcctatatttaccacagg
ttattgggccatgaagttgaggaagttttattcagatgtcacctacccaagcatttttct
gctccaaacttgccagatttgaacaggtctcaagtttatgctgttaagcatgctttacaa
aggccactatctcttatacaaggtcctcctggtacagggaaaactgtgacgtctgccact
atagtctatcaattagtgaagcaaaatggtggtccagtgttagtttgtgctcctagtaac
actgctgtagaccaactaactgaaaaaatccataaaaccgatttaaaagttgtgagatta
tgtgctaaatctcgcgaagccatagactccccagtaagttttctcgcgcttcacaatcaa
ataaggaaaatggaaggcaatactgaactacaaaagttacaacagctaaaagatgagacc
ggagaactgtccagtgtcgacgaaaaacgttacagaatgttaaaaaaacttgccgaaaaa
gaactgttagaggccgcagacgttatatgttgcacttgcgtaggcgccggcgacccccga
ttagttcgcttgaagttccattcaattttgattgatgaaagtatgcaggcaacagaacct
gaatgtatggtaccggtggtcctcggtgttaaacagctaattttggtaggcgatcactgt
caacttggtccagtagtaatgtgtaaaaaagcagccagagccggcctttctcaatcgctg
ttcgagagactcgtcgtcttgggaattagaccttttaggcttgaggtgcagtaccgtatg
caccctgaactctcccggtttccttcagatttcttttatgaaggaagtttgcaaaacggt
gttagtgccgaagagagaaaattggtcaacattgattttccgtggccaatacaagacaga
ccgatgttctttttggtcactcaaggccaggaggagatcgctggcagcggcaccagctat
ctaaacagaaccgaagcgtctaatgtagagaaaatagcgacaaggttccttcgtgctggt
ataaaacctgaacaaatcggaataattacaccttatgaagggcaaagggcttatctggtg
cagtatatgcaataccagggttcccttcatagcaagttgtatcaggaaatcgagatcgct
agtgtggatgctttccaaggaagagagaaggatattattatcatgtcttgtgtcaggagc
aatgaacatcaaggaattggttttctaaatgatccaagacgtcttaacgtcgcactgacc
agagcaaagtatggaattataattgtgggcaatccgaaagtgttgtccaaacaacccctg
tggaatcatctcttatctttttacaaggaacaaaaggttttggtagaaggtcccttaaca
aacatgaaagaatccctaatacaatttgccaaaccaaaaaaactgactaattctgaaaac
cccggcagccactttatgtccacctccatgtttgacgcgcgagaagcgatggttccgggt
tcgattttttttagaactagctctacaatgaacggctctgcaggtccctttggcaacttg
ggtacaacattccagccaaacagacccatgcaaatggacatgttcggacgaactcacgat
cccatcagctatatcgcccctgaaagggctcaagccggcttaaatctaccagttcccatg
gggatgtttatgaatatggcccatattccacccagattctacaatcaacatcaacaagcc
atgcaggctagacaacagcagcagaatccgaggattaatagtagaagacctccgcaaaga
caaaaaggaaaacttcttagccaagatcaaacgcaaccgtttagtcagagtctacaattg
acacaaggaggaatgtctcagcccggattgtcgcaaccaggcttcagtctttcccaaccc
ggattaagtcaagcggaactcagccaggatctgtacatggcagagtaccagagtcagatg
gacgggctcttgtcccaggactctacttatcaaggagacaggtccgcattttaccaaccg
agcgcccaattctcacagccctattga
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