Anthonomus grandis grandis (boll weevil): 126741884
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Entry
126741884 CDS
T08911
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
agrg
Anthonomus grandis grandis (boll weevil)
Pathway
agrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126741884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrg03019
]
126741884
03041 Spliceosome [BR:
agrg03041
]
126741884
03009 Ribosome biogenesis [BR:
agrg03009
]
126741884
03016 Transfer RNA biogenesis [BR:
agrg03016
]
126741884
Enzymes [BR:
agrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126741884
Messenger RNA biogenesis [BR:
agrg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126741884
Spliceosome [BR:
agrg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126741884
Complex C
U4/U6.U5 tri-SnRNP related factors
126741884
Ribosome biogenesis [BR:
agrg03009
]
Eukaryotic type
Pre-60S particles
Helicases
126741884
Transfer RNA biogenesis [BR:
agrg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126741884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
126741884
NCBI-ProteinID:
XP_050304302
LinkDB
All DBs
Position
11:complement(12324566..12406197)
Genome browser
AA seq
1025 aa
AA seq
DB search
MADSIDELFDCFEANAEDASGVVEENSASEGDDKRQIVKRINEDAEDIAVKKIRTDDVNV
DDINFEELKNRIVVHSIDTLGSCTHEVACPPGQKYAPLQPREGEPAKVYPFTLDPFQNES
ILCVDNNQSVLVSAHTSAGKTVIAEYAVAKSLKNKQRVIYTTPIKALSNQKYREFLEEFK
DVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWE
ETLILLPHNVHFVFLSATIPNARQFVEWVAHLHQQPCHVVYTDYRPTPLQHFIYPAGGSG
IHMVVDETGTFKEDSFNAAMAVLQTGGDAAKGDQKGRKGGIAGKNPAETDIFKVVKMIME
RNFAPVIIFSFSKKECEVYATQMAKLDFNTAPEKQLVDEVFNNAMDVLSESDRHLPQVEN
ILPLLRRGIGIHHGGLLPILKETIEIMFGEGLIKALFATETFAMGLNMPARTVLFTSMSK
FDGQQMRWITSGEYIQMSGRAGRRGLDDKGIVILMVTEKVPPAVGREIVKGLPDPINSAF
HLTYNMVLNLLRVEEINPEYMLERSFYQFQNQTNIPILHEDYLKKLAEFNEIEVKEEDKV
ATYYAIRRELDFLGVQFREYLTRPRYLLPYMQPGRLVKIKTEEAEYDWGAIVNFKKLQEV
QTTRKQGKVKTKAVTKVMLDILLNVIPGEGENVESIIPKPCIDGQKGEVEIVSVESKYVT
HISQVRLFCPPDLRSKDARKGMYKAIKEVKKRFPEGPPLLDAVKDMKIDDPDFLGIVKKI
EILEKKLYDHPLHKSEILATEYDKYEKKVMAETALSEAKEKLLNAKSVLQLDELKCRKRV
LRRLGYCTSSDVIQLKGRVACELSSADELLITEMLFNGLFGSLTPQQACALLSCFVFDER
SNESPKVCDELTGPLRQMQDLARRIAKVSNEARLPIDEDKYVEQFKPFLMEVVFSWANGA
SFADLCQMTEVFEGSIVRCMRRLEELLRQMVQASKTIGNIELEDKFNHAIKIIKRDIVFS
SSLYL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccatagacgagttgttcgattgcttcgaagcaaatgcagaagatgcttcg
ggagtggttgaagaaaactcggcatctgaaggtgatgataagaggcaaattgttaagaga
atcaatgaggatgctgaagatattgcggtgaagaaaattcgtacggatgatgttaatgtt
gatgatattaattttgaagaattgaaaaacagaatagtggttcacagtatagacactctt
ggatcttgtacacatgaggtggcatgtcctccgggccaaaaatatgctcctttacaaccc
cgggagggcgaaccagcaaaagtctatccatttaccctagatccctttcaaaacgagtca
attttatgtgtggataataatcagtcagttttggtatctgcacatacatcagcaggaaaa
actgttatagctgaatatgccgttgcaaaatccttaaaaaataagcagagggtaatatac
acaacaccaatcaaagctttatcaaatcagaaataccgagaatttttagaggaatttaaa
gatgttggtttggttactggagatgttactatcaacccatcagcatcttgccttataatg
acaactgagattctaaggaacatgctttacagaggctcagaaataatgagagaagtcgga
tgggtagtatttgatgaaatccattacatgagagataaagaaagaggtgttgtctgggag
gaaacacttatattattgccacataatgtacatttcgtatttctgtctgccactattccc
aatgcaaggcaatttgtggaatgggtagctcacctacatcagcaaccttgccatgtggtt
tatactgattatagacctactcctttgcagcattttatttatcctgcaggtggaagtggt
attcatatggttgtggatgaaacgggaacatttaaagaagacagttttaatgctgcaatg
gcagtattgcaaaccggtggcgatgcagcaaaaggggatcaaaagggtagaaaaggcgga
atcgctggtaaaaaccccgcagaaacagatatttttaaagtggtaaaaatgatcatggaa
cgaaattttgctcccgtgattattttcagttttagtaaaaaagagtgcgaagtatacgcc
acacagatggctaagctggactttaatacagcacccgaaaagcaactagtcgatgaagtt
tttaacaatgcaatggacgttttgtctgaatcggatagacacttgccgcaagtggagaat
attttgccgctattaaggcgtggaataggcattcatcatggtggtttattgccaatttta
aaagaaaccattgaaatcatgttcggtgagggtcttattaaggccctgtttgccacagaa
acatttgctatggggttaaatatgcctgcgagaactgttttgtttacttcgatgagtaaa
tttgacggacaacaaatgagatggataacatctggcgaatacatccagatgtctggtagg
gccggtagaagaggtctagatgataaaggtatagtgatattaatggtgacagaaaaagta
ccaccagcggttggaagagaaatcgtgaaaggactcccagaccccattaactctgctttt
catttaacttacaatatggtactgaacttgctgcgagttgaggagattaatcccgaatac
atgttggaacggtcgttttaccagtttcagaaccagaccaatattccaatccttcatgaa
gattacttaaaaaaactggccgagtttaatgaaattgaagtaaaagaagaggacaaggtt
gctacttattatgcaataagaagggaattggattttcttggcgtacaatttagagaatat
ttaacaagaccacgctatttactgccttacatgcaacctggaaggcttgttaagattaaa
accgaagaagcagaatacgactggggtgcaatagtcaactttaaaaaattacaagaagtt
caaactacaagaaaacagggaaaagtaaaaacaaaagctgtaactaaagtgatgctggat
attttattaaatgtaatcccgggagaaggagagaatgttgaaagtattataccaaagcct
tgtatagatggacagaaaggagaggtggaaatcgtgagtgttgaatccaaatatgttact
cacatctcacaggtgcgtcttttctgtcctccagatttaagatccaaagatgcgcgtaag
ggtatgtacaaagctataaaagaagtaaaaaaacgatttcctgagggtcctcctttgctg
gacgctgtaaaagacatgaaaatcgatgatccagacttccttggtatcgtaaagaaaatt
gagattttggaaaaaaagctttacgatcatccattgcacaaaagtgaaatcttagcgacc
gaatatgataagtacgaaaaaaaagtgatggctgaaacggctttatccgaagcaaaagag
aaactgttaaacgccaaatcggtactgcagttggacgagctaaagtgtcgcaaaagagtt
ttgagacgactaggctattgtactagtagtgatgttattcagttaaagggacgagttgcg
tgcgagttaagcagcgcggacgaattattaataacggaaatgttattcaacggtcttttc
ggcagtctaacgccccaacaggcctgtgcattgctaagttgtttcgtttttgatgaaaga
tcgaacgagtcacctaaagtgtgtgatgaactgactgggcctctacgacaaatgcaggac
ttggcacgccgcatagcaaaagtaagcaacgaggcgcgcttaccaatagacgaagacaaa
tacgtcgaacaattcaaaccattccttatggaagttgtattttcttgggcgaatggcgct
tcttttgctgatttatgtcaaatgactgaagtttttgaaggatccatcgtcaggtgtatg
aggcgactcgaggaattactaaggcaaatggtgcaggcctccaaaaccattggtaatatt
gagttagaggataagtttaatcatgctattaagattattaagagggacatagtgttctct
tcaagtttatatttataa
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