Anthonomus grandis grandis (boll weevil): 126743716
Help
Entry
126743716 CDS
T08911
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
agrg
Anthonomus grandis grandis (boll weevil)
Pathway
agrg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126743716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrg03019
]
126743716
03041 Spliceosome [BR:
agrg03041
]
126743716
Messenger RNA biogenesis [BR:
agrg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126743716
Spliceosome [BR:
agrg03041
]
Complex B
Other components
Prp19-related factors
126743716
Complex C
126743716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
Mad3_BUB1_I
TPR_10
TPR_7
NRDE-2
PPR
RPN7
Mad3_BUB1_I_2
DHR-2_Lobe_A
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
126743716
NCBI-ProteinID:
XP_050306886
LinkDB
All DBs
Position
13:complement(19425454..19460223)
Genome browser
AA seq
853 aa
AA seq
DB search
MPIKDGRPKPVDIMFSEEDLPYEEEILRNPYSVKHWLRYIDHKKKAPKHGVNLIYERALK
ELPGSYKLWYNYLRIRRQQVKNRCITDPGYEEVNNAFERALVFMHKMPRIWMDYCTFLTD
QNKITRTRKVFDRALRALPVTQHHRIWPLYLVFVKKHDIHETAVRVFRRYLKLFPEYGEE
YVEFLNDVGRLDEAAIILAKLVNDENFVSQNGKSKHQLWNELCALISNNPDKVQSLNVDA
IIRGGLRRYTDQLGHLWNSLANYYVRSGLFDRARDVYEEAIQTVTTVRDFTQVFDAYAQF
EELSLSKRMEEISKISEPSDDDNIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWH
KRVQLYDGKPHEIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYEKNGQVDDARLIFEKA
IEVQYIKVDDLASVWCEWTEMEIRNENYEEALKLMHRATVLPARKVAYHDESETVQSRLY
KSLKVWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGVFLEENNYFEEAFRAY
EKGISLFKWPNVYDIWNTYLSKFLKRYGGTKLERSRDLFEQCLEKCPPQFAKHLYLLYAK
LEEEHGMARHAMAVYERATKAVPENEMFEVFNIYIKRAAEIYGIPKTRQIYEKAIEVLPE
NRTRQICLRFADMETKLGEIDRARAIYSHCSQICDPRVTTEFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMSAQMLSSASSMTGTTADLAPGEKDGMRLLEAKAAEMAVGS
SGAQRSGNIMFVRGETQGDKKDKVVNPDEIDIDDEDDDEEMEEEPEAPIETKSVPSEVFG
GLKKTGEEKEDSE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcccataaaagatggtagacctaagccagtggatattatgttctctgaagaagacctt
ccttatgaagaagagatcctcaggaatccctattcagtaaagcattggcttcggtatatt
gaccataagaaaaaagccccaaaacatggtgtcaatcttatatacgaacgtgcccttaaa
gaactgcccgggtcatataaattatggtataattacctaaggataagacggcaacaagtt
aaaaacagatgtatcacagatccaggttatgaggaggttaataacgcatttgaaagagct
ctagtttttatgcacaaaatgcctaggatttggatggactattgcaccttcttaactgat
caaaataagataactagaaccaggaaggtgtttgatagggctcttagggcactgccagtg
acacaacatcatcgaatttggcctttgtatttggtttttgtgaaaaaacatgacattcat
gaaacagctgtaagagtctttaggaggtacttaaaactatttccagaatatggtgaggag
tatgtagagttccttaatgatgtggggaggttggatgaggcagctattatcttagcaaaa
ctggtgaatgatgaaaattttgtgtctcaaaatggaaagtcgaaacatcagttatggaat
gagctctgtgctttgatatctaataatccagataaggttcagtctttaaatgttgatgct
attataagaggtggtctaagaaggtacacagatcaactgggtcatctctggaactcccta
gcaaactactatgttcgtagcggtctctttgatcgcgctagagacgtttatgaagaagcc
atacaaaccgtcaccactgtacgagattttacgcaagtttttgatgcttatgcccagttt
gaagagctaagtctgagtaaaaggatggaggaaatctcgaaaatctctgagccatccgat
gacgacaatattgatttagaattgagacttgctagattcgagcatttgatggaaaggaga
ttattactgttaaattccgttttgctcagacaaaatccgcataatgtacaggaatggcat
aaacgagttcaactgtatgatggtaaaccacatgaaataatcaacacatatactgaagcg
gtccaaacagtgcaacctaaattggccgttgggaaattacatactttgtgggttgaattt
gcgaaattttatgagaaaaatgggcaagttgatgatgcaagattaatttttgaaaaggct
attgaagtacagtatataaaagttgacgatcttgcttccgtgtggtgtgaatggactgag
atggagattagaaacgaaaattatgaagaagctcttaaactaatgcaccgagccacagta
ctgcctgcaagaaaagtagcctaccatgacgagtcggaaacagtacagtctcgcctttat
aaatcattaaaagtgtggtccatgtatgccgatttagaagaaagtttcggcacctttaaa
tcctgcaaagccgtctacgatcggatcatagacctcaaaatcgccacgccgcaaataatt
ataaattacggcgtgtttttggaggaaaacaactatttcgaagaagcattccgggcatac
gagaagggtatatcgctgtttaaatggccgaacgtttatgacatatggaatacttattta
tcgaaattcctcaaacgttatggaggaacaaaactggagaggtcaagagatttgttcgag
cagtgtttagagaaatgcccgccgcaatttgctaaacatttgtacttgctttatgccaag
ttggaagaggaacacgggatggctaggcacgcaatggcagtgtatgaaagagctacaaag
gccgttccagaaaacgaaatgttcgaggtattcaacatctacataaaaagagcagcggaa
atttacggtataccaaagacacgccagatatacgaaaaagccatcgaagttttaccggaa
aatcgcaccaggcagatctgcttaaggttcgccgatatggaaacaaaactcggagaaatc
gatagagctcgagccatttactctcactgcagccaaatatgcgatcctcgtgtcaccaca
gaattttggcagacttggaaagagtttgaggttagacatggaaacgaagacacgatgagg
gaaatgttgaggattaagagaagcgtacaggctacttataatactcaggtaaacatgatg
tcagctcaaatgttaagctctgcttcgtcaatgactggaacaacggccgatcttgctcct
ggtgagaaagacggcatgcgtttgttagaggctaaagccgctgagatggccgtaggttct
tcgggagcacaacgttccggtaatataatgttcgtaagaggagagacccaaggcgacaaa
aaggataaagttgttaatccagatgaaatcgatattgatgacgaagatgatgatgaggaa
atggaagaggaaccagaggcaccaattgaaactaagagtgtcccgtctgaagtatttgga
ggattgaaaaaaacaggagaggagaaggaagattcagaataa
DBGET
integrated database retrieval system
