Anthonomus grandis grandis (boll weevil): 126746489
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Entry
126746489 CDS
T08911
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
agrg
Anthonomus grandis grandis (boll weevil)
Brite
KEGG Orthology (KO) [BR:
agrg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agrg03016
]
126746489
Enzymes [BR:
agrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126746489
Transfer RNA biogenesis [BR:
agrg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126746489
Prokaryotic type
tRNA splicing ligases
126746489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
126746489
NCBI-ProteinID:
XP_050310734
LinkDB
All DBs
Position
17:14325928..14333742
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AA seq
506 aa
AA seq
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MVVRSYNDELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNETLEKLMLDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGKSIGLPDIHSGYGFAIGNMAAFDMNDPLSVVSPGGVGFD
INCGVRLLRTNLFERDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVEMEKAMKRDNIETNDRQLACARIN
SPEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFLVTPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
LETFGSTCHGAGRALSRAKSRRNIDYTEVLRRLEDMNIAIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKTIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtacgttcgtataacgatgaactaaaatatttggagaaaatcaacccttattgc
tggcgcataaaaaaggggttccagccaaatatgaacgtcgagggggtgttttacgtaaat
gaaactctggaaaaacttatgttggatgaactaaggaatgcttgtaggcctggaatggtc
ggagggtttctgcccggtgtaaaacagattgccaatgtagcagcattacccggaatagta
ggaaagtccatagggctcccagacatccattcaggctacgggtttgccataggtaatatg
gccgctttcgatatgaacgatccactttccgtcgtcagtcctggtggggtaggatttgat
ataaattgcggagttaggctgttaagaactaacttattcgaacgtgacgttcaacctatc
aaagaacagcttgcccaaagtttgtttgatcatatcccggtgggagttggatccaaaggt
ataatcccaatgaatgccaaagacctagaagaagccttagagatgggtatggactggtcc
cttagggagggatacatttgggctgaagataaagagcattgtgaagagtatggtaggatg
ctcaatgctgacccttcaaaagtgagcatgagggcgaaaaaaagggggttgccccagttg
ggaaccttgggagctggaaatcattatgcagagatccaagtggttgatgaaatctatgat
aaatgggccgcaagcaagatggggattgaagaaaaagggcaagtttgtgttatgatccat
tcaggtagcagaggttttggtcaccaagtggccaccgatgccctagtcgaaatggaaaaa
gcaatgaaaagagacaatatagaaacgaacgaccgtcagctggcttgtgcccgaatcaac
agcccagaaggtcaggactacttgaaagcgatggcggcggccgctaacttcgcttgggtt
aacaggagttcgatgacgtttttaactaggcaggcgttcgctaaacaatttttggtgaca
ccggacgatttggatatgcacgttatttacgatgtttctcataatatcgctaaagttgag
gagcatattgtcgatggaaaacagaagactcttcttgtacatcgaaagggatcaaccagg
gcgttccctccacaccatcccttaatacctgtggattatcagttgaccggccaaccggtt
cttatcggtggtaccatgggtacatgcagttatgtgctgactgggactgagcaaggaatg
ttggaaactttcgggtcaacttgccacggagcgggaagagcattatccagggcaaaatcg
aggaggaacattgattatacggaggtgctcaggaggctggaagatatgaatattgccata
agagtcgcttcgcccaaattggtcatggaggaggctccggagtcctataaaaacgtaacc
gatgtggtggacacttgtcatgctgccggaatttcgaaaaagaccattaaattaaggccc
attgctgttatcaagggttga
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