Agrococcus sp. Marseille-Q4369: JSQ78_01940
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Entry
JSQ78_01940 CDS
T09684
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agro03016
]
JSQ78_01940
Enzymes [BR:
agro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JSQ78_01940
Transfer RNA biogenesis [BR:
agro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JSQ78_01940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lactamase_B_5
Phytase-like
Motif
Other DBs
NCBI-ProteinID:
QUW20020
LinkDB
All DBs
Position
complement(367724..368923)
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AA seq
399 aa
AA seq
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MAQGPFDVIVDADALRSAADRLAAGTGPVAVDAERANGFRYSSRAYLVQLHRRGSGTVLI
DPIAVDDLSPVQEAIGGEEWIIHAASQDLPCLREIGLEPATLFDTELGARLAGFERVGLA
AVSERLVGLRLRKEHGASDWSTRPIPQSWLEYAALDVEVLPDARDALAAELESQGKQAIA
EQEFAYALERRPKPPAAEPWRRLSGLHAIRDRRQLALARELWLARDALARETDTAPGRLV
PDRSLLVAATADVDAKQRLAARKDFTGRASRSELDRWWAAIEAGRATDDPPALRVKSDEP
PPPRFWRQRRPEADARLKAARAALQQVSDELAIPAENVLMPDTLRRLAWEPIEPTADAIG
EALRARDARPWQVAATAQRIAAAFVEADQAPAEAPEAES
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcagggccccttcgacgtcatcgtcgacgcggatgcgctgcggagcgccgcagac
cggctcgcggcaggcacggggccggtcgccgtcgacgcggagcgcgcgaacggcttccgc
tacagctcgcgcgcctacctcgtgcagctgcatcgccgcggcagcggcacggtgctcatc
gacccgatcgcagtcgacgacctctcccccgtgcaggaggcgatcggcggcgaggagtgg
atcatccacgccgcgagccaggacctcccgtgcttgcgcgagatcggcctcgagcccgcg
acgctcttcgacaccgagctcggcgccaggctcgcgggcttcgagcgcgtcggcctcgcc
gccgtgagcgagcggctcgtcggcctgcggctccgcaaggagcacggcgcgagcgactgg
tcgacccggcccatcccgcagtcctggctcgagtacgccgcgctcgacgtcgaggtgctc
ccggatgcgcgcgatgcgctcgctgcggagctcgagtcccagggcaagcaggcgatcgcg
gagcaggagttcgcgtacgcgctcgagcggcgcccgaagccgcccgcggcggagccgtgg
cggcggctctcgggcctgcacgccatccgcgaccgccggcagctcgccctcgcgcgcgag
ctgtggctcgcccgcgacgcgctcgcccgcgagaccgacaccgcgccgggccggctcgtg
cccgaccgctcgctgctcgtcgccgcgaccgcggacgtcgacgcaaagcagcgcctcgcc
gcgcgcaaggacttcacgggtcgcgcgagccgctccgagctcgaccggtggtgggccgcg
atcgaggcgggccgggcgaccgacgacccgccggcgctgcgcgtcaagagcgacgagccg
ccgccgccgcgcttctggcgccagcgacggcccgaggccgacgcgcggctcaaggcggcg
cgcgccgcgctgcagcaggtctcggacgagctcgccatcccggcggagaacgtgctcatg
cccgacacactgcgacgcctcgcctgggagcccatcgagccgaccgcggacgcgatcggc
gaggcgctccgggcacgcgacgcacgcccgtggcaggttgcggcgaccgcacagaggatc
gccgccgcctttgtagaggcagaccaagcgcccgccgaggcgcccgaggcggagtcgtag
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