Agrococcus sp. Marseille-Q4369: JSQ78_02555
Help
Entry
JSQ78_02555 CDS
T09684
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSQ78_02555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agro03019
]
JSQ78_02555
03009 Ribosome biogenesis [BR:
agro03009
]
JSQ78_02555
Enzymes [BR:
agro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JSQ78_02555
Messenger RNA biogenesis [BR:
agro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JSQ78_02555
Ribosome biogenesis [BR:
agro03009
]
Prokaryotic type
rRNA helicases
JSQ78_02555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
UvrA_inter
adh_short
Motif
Other DBs
NCBI-ProteinID:
QUW19250
LinkDB
All DBs
Position
complement(496191..497981)
Genome browser
AA seq
596 aa
AA seq
DB search
MTDTQTAPATDDEGDRATFAALGLPPEILRALDDVGYETPSAIQAETIPLLLEGRDIIGL
AQTGTGKTAAFALPVLSAIDVARREPQALVLTPTRELAVQVCEAFERYAAHLGGVHVLPI
YGGQGYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSSLSHVVLDEADEMLRMGFAED
VDEILQQTPVEKQVALFSATMPRQIRAISQQHLREPAEVTVRASTTTAPSITQRALMVSY
QQKLEALTRVLEVEPFEAAIVFTRTRNETETVAERLRARGYAATAISGDVAQPQREKTID
QLRSGDLDVLVATDVAARGLDVERISHVINYDLPIDTESYVHRIGRTGRAGRTGDAISFV
TPRERRMLSAIEKATRGTVEIMPMPSAGEVNATRLTRFDEAITAALGETERIERFREIIA
HYVAHHDAQQEDVAAALAVVAQGDTPLLLDAEADRALQAPKERDRDRDAGGDRPERSSRR
GPSDATTYRLAVGSKRGVEPRQIVGALANEGGLGRDDFGRITIRYDFTLVELPELSPGQL
ERLSQTRILGVPIDIRVDTGRRERDERGPRRDRDDRAPRRERDERPPRKPRHGRDR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacgcagaccgcgcccgccaccgacgacgagggcgatcgcgcgacgttcgcc
gcactgggcctgccgcccgagatcctgcgcgccctcgacgacgtcggctacgagacgccc
tccgcgatccaggccgagacgatcccgctcctgctcgagggacgcgacatcatcggcctc
gcccagacgggcacgggcaagacggccgccttcgcgctgccggtgctttcggcgatcgac
gtcgcccggcgcgagccgcaggcgctcgtgctcaccccgacacgcgagctcgcggtgcag
gtgtgcgaggcattcgagcgctacgcggcgcatctcggcggcgtgcacgtgctgccgatc
tacggcggccagggctacggcgtccagctctccgcgctgcgccgcggcgtgcacgtggtc
gtcggcaccccgggccgcatcatggaccacctcgcgaagggcaccctcgacctctcgagc
ctcagccacgtcgtgctcgacgaggccgacgagatgctccggatgggcttcgccgaggac
gtggacgagatcctccagcagacgcccgtggagaagcaggtggcgctgttctcggcgacg
atgccgcggcagatccgggcgatctcgcagcagcacctccgcgagcccgccgaggtcacg
gtgcgcgcgagcacgacgacggccccgagcatcacccagcgagcgctcatggtctcgtac
cagcagaagctcgaggcgctcacgcgcgtgctcgaggtcgagccgttcgaggcggcgatc
gtcttcacccgcacgcgcaacgagaccgagacggtcgcggagcgcctgcgcgcgcgcggc
tacgcggcgaccgccatctcgggcgatgtggcgcagccgcagcgcgagaagacgatcgat
cagctccgctcgggcgacctcgacgtgctcgtcgcgaccgatgtcgccgcgcgcggcctc
gacgtcgagcgcatcagccacgtcatcaactacgacctgccgatcgacacggagtcgtac
gtgcaccggatcggccgcaccggccgcgcgggccgcacgggcgacgcgatcagcttcgtc
acgccgcgcgagcggcggatgctgagcgcgatcgagaaggcgacgcgcggcacggtggag
atcatgccgatgccgagcgcgggcgaggtgaacgccacgcggctcacgcgcttcgacgag
gccatcaccgccgccctcggcgagacggagcgcatcgagcgcttccgcgagatcatcgcg
cactacgtcgcgcaccacgacgcgcagcaggaggacgtcgccgccgcgctcgccgtcgtc
gcgcagggcgacacgccgctgctgctcgacgccgaggcggaccgcgcgctccaggctccc
aaggagcgcgaccgcgatcgcgacgcgggcggcgaccgtcccgagcgcagctcgcgccgc
ggtccgtcggacgcgacgacctaccggctcgccgtggggagcaagcgcggcgtggaaccg
cggcagatcgtcggcgcgctcgcgaacgagggcggcctcggccgcgacgacttcgggcgc
atcacgatccgctacgacttcacgctcgtcgagctgccggagctctcccccggtcagctc
gagcggctctcgcagacgcgcatcctcggcgtgccgatcgacatccgcgtcgacaccggc
cgtcgcgagcgcgacgagcgcggtcctcgccgcgaccgcgacgatcgggcgccccgccgg
gagcgcgacgagcggccgccgcgcaagccgcgccacgggcgcgatcggtga
DBGET
integrated database retrieval system
