Agrococcus sp. Marseille-Q4369: JSQ78_03425
Help
Entry
JSQ78_03425 CDS
T09684
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSQ78_03425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agro03019
]
JSQ78_03425
03009 Ribosome biogenesis [BR:
agro03009
]
JSQ78_03425
Enzymes [BR:
agro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JSQ78_03425
Messenger RNA biogenesis [BR:
agro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JSQ78_03425
Ribosome biogenesis [BR:
agro03009
]
Prokaryotic type
rRNA processing factors
JSQ78_03425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QUW19387
LinkDB
All DBs
Position
complement(662623..665139)
Genome browser
AA seq
838 aa
AA seq
DB search
MVDNDTTLPEEPTTATGAAATTAPEAQKAPRKRATTRRKAAPEAAASPETADASTDTADA
SPEQTVASPEQTAVAEPAQQPEAPAPDSLTESGEQEPGHEPGLADPGKPADASGSEEATQ
DAPSEDDPIAAARTLPELPAGPFGLLFHAPDLERLPTLPPLRAELDDEDDEDDEGDDQQD
GRRSRRSRSRSRSRRSEDEKPLITEPQKVRGSTRLEAKRQRRREGRDAGRRRTVVTETEF
LARREAVERQMIVRSKHDRVQLAVLEDGVLVEHYVAKASESSLIGNVYLGRVQNVLPSME
AAFVDIGRGRNAVLYSGEVDWDAAELEGQPRKIELALKPGDTVLVQVTKDPVGHKGARLT
SQISLPGRYLVSVPGGSMNGISRKLPDTERARLKKILKQVLPEGVGVIVRTAAEGATEEQ
LTRDVERLTRQWERIQQLRNGSAPQRLHAEPDLLVKIVRDVFNEDFSKLIIQGSEALTTI
REYLEAIAPDLLDRVEAYDGTDDPFDHFRIAEQIDKALDRKVWLPSGGSLVIDRTEAMTV
VDVNTGRFVGAGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVQ
RRLIECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETYSEPCEICAGRGVIVHHEPVS
KPQRQQQENGGQGGGRRRGRGKQGEQQPEQHQQQQGASTGGTHAITDDMRKGLSQIAAAA
KGKPVDAEQPAAEQPVVEQPVVEQPKGEQGRRERPSGKVQPSKAAVEAVAAEPVVTILDI
PVEPKQEQPAEKVSERDLDGLLGGALDALAAPAPGTGKAARRSRRASSGVITAKPDDK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggtggacaacgacacgaccctccccgaagagccgacgacggcgacgggagcagcagcg
acgaccgcgcccgaggcgcagaaggcgccgcgcaagcgcgccacgacgcgccgcaaggcg
gcgcccgaggcggccgcgtccccggagacggcggatgcgtcgacggacacggcggatgcg
tcgcccgagcagacggtcgcgtcgcccgagcagacggcggtcgccgagcccgcgcagcag
cccgaggcgccggcccccgactcgctcaccgagtcgggggagcaggagcccggccacgag
cccggcctcgccgaccccggcaagcccgcggacgcatccggctcggaggaggcgacccag
gacgcgccgagcgaggacgaccccatcgccgccgcgcgcacgctgcccgagctgcccgcc
gggcccttcggcctgctcttccacgcccccgacctcgagcggctcccgacgctgccgccg
ctgcgcgcggagctcgacgacgaggacgacgaggacgacgagggcgacgaccagcaggac
ggccggcgctcgcgccgctcgcgctcgcggtcgcgctcgcgccgcagcgaggacgagaag
ccgctcatcaccgagccgcagaaggtgcgcggctcgacccggctcgaggcgaagcgccag
cgccggcgcgagggccgcgacgccggtcgtcgccgcacggtcgtgaccgagaccgagttc
ctcgctcgccgcgaggccgtcgagcggcagatgatcgtgcgctcgaagcacgaccgcgtg
cagctcgcggtgctcgaggacggcgtgctcgtcgagcactacgtcgcgaaggcgagcgag
tcgagcctcatcggcaacgtctacctcggccgcgtgcagaacgtgctgccgagcatggag
gccgccttcgtcgacatcggccgcggacgcaacgcggtgctctactcgggcgaggtcgac
tgggacgccgccgagctcgagggccagccgcgcaagatcgagctcgcgctcaagcccggc
gacaccgtgctcgtgcaggtcacgaaggatccggtcggccacaagggcgcccggctcacg
agccagatctcgctgcccggccgctacctcgtctcggtgcccggcggctcgatgaacggc
atctcccgaaagctgcccgacaccgagcgcgctcgcttgaagaagatcctgaagcaggtg
ctgcccgagggcgtcggcgtcatcgtgcgcacggccgcggagggcgcgaccgaggagcag
ctgacgcgcgacgtcgagcgcctcacgcgtcagtgggagcgcatccagcagctccggaac
ggctccgcgccgcagcgactgcacgccgagcccgacctgctcgtgaagatcgtccgcgac
gtcttcaacgaggacttctcgaagctcatcatccagggctcggaggcgctcaccacgatc
cgcgagtacctcgaagccatcgcgcccgacctgctcgaccgggtcgaggcctacgacggc
accgacgaccccttcgaccacttccgcatcgcggagcagatcgacaaggcgctcgaccgc
aaggtgtggctgccctcaggcggctcgctcgtcatcgaccgcaccgaggcgatgaccgtc
gtcgacgtcaacaccggccgcttcgtcggcgcgggcggcaacctcgaggagacggtcacg
aagaacaacctcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgacatcggc
ggcatcatcgtgatcgacttcatcgacatggtgctcgagtcgaaccgcgacctcgtgcag
cggcgcctcatcgagtgcttgagccgcgaccgcacgaagcaccaggtggcggaggtcacg
agcctcggcctcgtgcagatgacgcgcaagaagctcggcctcggactgctcgagacctac
tccgagccgtgcgagatctgcgcgggccgcggcgtcatcgtgcaccacgagcccgtctcg
aagccgcagcgccagcagcaggagaacggcggccagggcggcggtcgccgtcgcggccgc
ggcaagcagggcgagcagcaacccgagcagcaccagcagcagcagggcgccagcaccggc
ggcacgcacgcgatcacggacgacatgcgcaagggcctgtcccagatcgcggctgcggcg
aagggcaagccggtcgacgccgagcagccggccgccgagcagccggtcgtcgagcagcct
gtcgtcgagcagcccaagggcgagcagggccggcgcgagcgcccctccggcaaggtgcag
ccctcgaaggccgcggtcgaggcggtcgccgccgagccggtcgtgacgatcctcgacatc
ccggtcgagcccaagcaggagcagccggccgaaaaggtgagcgagcgcgacctcgacggg
ctgctcggcggcgcgctcgacgcgctcgccgcgcccgcgccgggcaccggcaaggccgcg
cgccgctcgcgccgcgcctcgtcgggcgtcatcacggcgaagcccgacgacaagtag
DBGET
integrated database retrieval system
