Agrococcus sp. Marseille-Q4369: JSQ78_04845
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Entry
JSQ78_04845 CDS
T09684
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSQ78_04845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agro03019
]
JSQ78_04845
03400 DNA repair and recombination proteins [BR:
agro03400
]
JSQ78_04845
Enzymes [BR:
agro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JSQ78_04845
Messenger RNA biogenesis [BR:
agro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JSQ78_04845
DNA repair and recombination proteins [BR:
agro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JSQ78_04845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
MarR_2
TniB
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QUW19629
LinkDB
All DBs
Position
complement(960491..962182)
Genome browser
AA seq
563 aa
AA seq
DB search
MPPRSSRTDQTAGTDRGSAGDRILAAAREYGWDDLRPGQREAVEAALEGHDVLAVMPTGH
GKSAIYQLAAKLLEGLTVVVSPLIALQRDQVEQLEEMGADPAVAVNSSQRVGENREAWEE
LEAGDAEFVFLAPEQLARDEVLERLRELQPSLLVVDEAHCVSAWGHDFRPEYLRLGHVVE
ALGHPTTVALTATAAPPVREEIVERLRMREPRQVVRGFDRPNIFLEVQRHSDDDAKRDAI
VERAIAEAKPGLIYVATRKDAERYAAALAEAGVRAESYHAGMSRVERERVHDAFSDGSAE
VVAATSAFGMGIDKADVRFVLHAAPPDSLDSYYQEIGRGGRDGEPALAALFHRQEDFGVH
RFRTGGGADVDMLSAVAARVRRAKQPVPPERLRERLDVGASRLTSAVNLLEQAGAVETTD
DGDLVWREGTVKPAVEEAARIAEARRRVDRSRVEMMRGYAETSGCRRRFLLGYFGEELPE
LCGACDTCRSGSAERIEEARESADASSDTAGDWTVGQRVRHESWGEGGVVSDDGDRITVL
FDEEGYKTLALEVVERSGVLQQL
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcctccccgctcctcgcgcaccgatcagaccgccggaaccgatcggggaagcgcgggg
gaccgcatcctcgccgccgcccgcgagtacggctgggacgaccttcggccagggcagcgc
gaggcggtcgaagccgccctcgaagggcacgacgtgctcgccgtcatgccgacgggtcac
ggcaagtcggcgatctaccagctcgccgcgaagctcctcgaggggctcacggtcgtcgtc
tcgccgctcatcgccctccagcgcgaccaggtcgagcagctcgaggagatgggcgccgac
cccgcggtcgccgtcaactcctcgcagcgcgtcggcgagaaccgcgaggcgtgggaggag
ctcgaggcgggcgacgccgagttcgtcttcctcgcccccgagcagctcgcgcgcgacgag
gtgctcgagcggctgcgcgagctgcagccgtcgctcctcgtcgtcgacgaggcgcactgc
gtctcggcgtggggccatgacttccggcccgagtacctcaggctcggccacgtcgtcgag
gcgctcgggcacccgacgaccgtcgcgctcaccgcgaccgccgcaccgcccgtgcgcgag
gagatcgtcgagcggctgcgcatgcgagagccgcgccaggtcgtgcgcggcttcgaccgc
cccaacatcttcctcgaggtgcagcggcacagcgacgacgacgccaagcgcgacgcgatc
gtcgagcgagcgatcgccgaggcgaagcccgggctcatctacgtcgcgacgcgcaaggac
gccgagcgctacgccgctgcgctcgccgaggccggcgtgcgcgccgagtcgtaccacgcg
gggatgtcgcgggtcgagcgggagcgcgtccacgacgcgttcagcgacggcagcgccgag
gtcgtcgccgcgacgtcggcgttcggcatgggcatcgacaaggccgacgtgcgcttcgtg
ctgcacgccgcgccgcccgactccctcgactcgtactaccaggagatcgggcgcggcggc
cgcgacggcgaaccagcgctcgcggcgctcttccaccgccaggaggacttcggcgtgcac
cgcttccggacgggcggcggagccgatgtcgacatgctctcggcggtcgccgcgcgcgtc
cggcgcgcgaagcagcccgttccgcccgagcggctgcgcgagcggctcgacgtgggcgcg
agccggctcacctcggcggtcaacctcctcgagcaagcgggggcggtcgagacgaccgac
gacggcgacctcgtgtggcgggagggcacggtcaagcccgcggtcgaggaggcggctcgc
atcgccgaggcgcggcgccgcgtcgaccgctcgcgcgtcgagatgatgcgcggctacgcc
gagacgagcggctgccggcgacggttcctgctcggctacttcggcgaggagctgcccgag
ctgtgcggcgcgtgcgacacgtgccgctcgggctcggccgagcgcatcgaggaggcgcgc
gagtcggcggatgcgtcgtccgacaccgcgggggactggaccgtgggccagcgcgtgcgg
cacgagtcgtggggtgagggcggcgtcgtgagcgacgacggcgaccgcatcacggtgctc
ttcgacgaggagggctacaagaccctcgcgctcgaggtcgtcgagcgctccggagtgctc
cagcagctctga
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