Agrococcus sp. Marseille-Q4369: JSQ78_04975
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Entry
JSQ78_04975 CDS
T09684
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSQ78_04975 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agro03021
]
JSQ78_04975 (rho)
03019 Messenger RNA biogenesis [BR:
agro03019
]
JSQ78_04975 (rho)
Transcription machinery [BR:
agro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JSQ78_04975 (rho)
Messenger RNA biogenesis [BR:
agro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JSQ78_04975 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
QUW20092
LinkDB
All DBs
Position
complement(982387..984522)
Genome browser
AA seq
711 aa
AA seq
DB search
MVPRPRPSRAGRHRKEHSHMTSEITDSIAAAEAAPEASASEQSAEAPAAPKRRSRRASTA
TVTAEPAKADAAPAEAPAADAQPAAEPAAAESGAEPTGEAEAPAATKRRAPARRKKAAPA
AEEEATAEAAPADAAPADAPASDAQATEQQPEAPAAEQATEQSAAEETTEQSADEQAEAP
ARGRRSPRASRSRKAADAPAEQADAPAGDAEQVAPAADAESGTTDDASDADEQQQSRQDG
EQQREGTSRRRRSRGKGSQQQDEQDSDDDDESSRRGRGRGQNGQNNQNNQRGQQPKQQQD
DEGSRRGRGRGRDRQRTLGQDAEPEIREDDVLLPVAGILDVLDNYAFVRTSGYLPGQNDV
YVSLAQVKKHGLRKGDAVVGAIKQPREGEQHSSRQKFNALVRVDSINGMSSEDALNRVEF
SKLTPLYPQERLRLETTQNKLSTRVIDLVAPIGKGQRGLIVSPPKAGKTLVMQAIANAIA
ENNPEVHLMIVLVDERPEEVTDFQRTVKGEVIASTFDRPAEDHTIVAELAIERAKRLVEL
GHDVVVLLDGITRLGRAYNLSAPPSGRILSGGVDSSALYPPKKFFGAARNIEHGGSLTIL
ATALVETGSKMDEVIFEEFKGTGNMELRLSRNMADKRIFPAVDVNASGTRREEMLMGVEE
TKVMWKLRRALAGLETQQALELVLKQLKETQSNVEFLMKVSKSVPGQHDKD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggtcccacgcccgcgaccatcgcgcgcgggccgacatcgtaaggagcactcgcacatg
acgagcgagatcaccgacagcattgccgcggcagaggccgcacccgaggcttccgcatcc
gagcagtccgccgaggcgcccgccgcgcccaagcgccgctcgcgtcgcgcgtcgacggcg
accgtgaccgcagagccggccaaggccgacgccgcccccgccgaggcgcccgccgctgac
gcgcagccggccgccgagcctgctgcagccgagtccggtgccgagccgaccggcgaggca
gaggcgcccgccgcgacgaagcgccgcgcgcccgcacgccgcaagaaggcggctcccgcc
gccgaggaggaggcgacggccgaggcagcgcccgccgacgccgcgcccgccgacgccccg
gcttcggacgcgcaggccaccgagcagcagcccgaggcgcccgccgccgagcaggcgacc
gagcagagcgctgccgaggagaccaccgagcagtccgccgacgagcaggccgaggcgccc
gcgcgcggccgccgctcgccgcgcgcgagccgctcgcgcaaggccgccgacgcgcccgcc
gagcaggccgacgcacccgcgggcgacgccgagcaggtcgcccccgcagccgatgccgag
agcggcacgacggacgacgcatccgacgccgacgagcagcagcagagccgtcaggatggc
gagcagcagcgcgagggcacctcccgccgccgccgctcgcgcggcaagggctcgcagcag
caggacgagcaggactcggacgacgacgacgagtcgtcgcgccgcggccggggccgcggt
cagaacggccagaacaaccagaacaaccagcgcggccagcagcccaagcagcagcaggac
gacgagggctcgcgccgcggccgtggccgaggtcgagaccgccagcgcacgctgggccag
gacgccgagcctgagatccgcgaggacgacgtgctgctgcccgtcgccggcatcctcgac
gtgctcgacaactacgcgttcgtgcgcacctccggctacctcccgggacagaacgacgtc
tacgtctcgctcgcgcaggtgaagaagcacggcctgcgcaagggcgacgccgtcgtcggc
gccatcaagcagccgcgcgagggcgagcagcactcgagccgccagaagttcaacgcgctc
gtgcgcgtcgactcgatcaacggcatgtcgagcgaggatgcgctgaaccgcgtcgagttc
tcgaagctcacgccgctgtacccgcaggagcgcctgcgcctcgagacgacgcagaacaag
ctctcgacgcgcgtcatcgacctcgtcgcgccgatcggcaagggccagcgcggcctcatc
gtctcgccgcccaaggccggcaagaccctcgtgatgcaggccatcgcgaacgcgatcgcc
gagaacaaccccgaggtgcacctcatgatcgtgctcgtcgacgagcgccccgaggaggtc
accgacttccagcgcaccgtcaagggcgaggtcatcgcgtcgaccttcgaccggcccgcc
gaggaccacacgatcgtcgctgagctcgcgatcgagcgcgcgaagcggctcgtcgagctc
ggccacgacgtcgtcgtgctgctcgatggcatcacgcggctcggccgcgcctacaacctc
tccgccccgccgtcgggacgcatcctctcgggtggcgtcgactcgagcgcgctctacccg
ccgaagaagttcttcggcgccgcgcgcaacatcgagcacggcggctcgctcaccatcctc
gcgaccgcgctcgtcgagacgggctcgaagatggacgaggtgatcttcgaggagttcaag
ggcaccggcaacatggagctgcgcctctcgcgcaacatggccgacaagcgcatcttcccc
gccgtcgacgtcaacgcctccggcacgcgccgcgaggagatgctcatgggcgtcgaggag
acgaaggtcatgtggaagctgcggcgcgcgctcgcgggcctcgagacgcagcaggcgctc
gagctcgtgctcaagcagctcaaggagacgcagtcgaacgtcgagttcctcatgaaggtc
tcgaagtcggtgcccggccagcacgacaaggactga
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