Agrococcus sp. Marseille-Q4369: JSQ78_07315
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Entry
JSQ78_07315 CDS
T09684
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JSQ78_07315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agro03021
]
JSQ78_07315 (rpoC)
03400 DNA repair and recombination proteins [BR:
agro03400
]
JSQ78_07315 (rpoC)
Enzymes [BR:
agro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JSQ78_07315 (rpoC)
Transcription machinery [BR:
agro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JSQ78_07315 (rpoC)
DNA repair and recombination proteins [BR:
agro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JSQ78_07315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUW17699
LinkDB
All DBs
Position
complement(1454340..1458224)
Genome browser
AA seq
1294 aa
AA seq
DB search
MIDATTFDELRIGLATADDIRAWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIRVDDEARHERLPALEQELRLKIGEIEKRRDADIAERLAQLETD
VAELEEEGAKADQKRKVRDAGEREMAQLRKIADDQIAHMERVFDDFRSLKLGDLKAEDAV
YHDLVDLYGEFFEGHMGAEAIKLRLLSFDLAAESEDLHQQIAEGKGQRKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKHAKRMVERSK
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPTHEIVSGLHHLTSVKADAVGTGR
AFSSVAEAIMAMDQGTLDLNAVVRIRLSDLVFRDQDRPEGFVDGEPFLLETTLGRALFNE
LLPADFPFVAEVAAKPVISLIVNALAERYPKTVVAATLDKIKDAGFHWATRSGITVALSD
VITPARKDEIVGAAEESARKIQDKFEKGLLTDAERRSDLTELWTRATNDVQKATQEAFDE
GNSIYRMVTAGANGNWIQVRNITGMRGLVTNPKGEVIPRPIISSYREGLTVAEYFIATHG
ARKGSADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLDVPIAETIDGQLVLHENV
ESAAFARNLAVDVVTSDGTVLATGGSDIGDREIRAFIGAGVETVKVRSVLTCESAVGVCA
HCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSVGASDITQGLPRVTEL
FEARTPKNASPIAEVAGRVRIEEDEKSKRVVITPDNGDEELTYQVLRRATLEVGDGDHVE
QGQQLQVGSIDPKEVLRVRGVREVQKHLVSGVQDVYRSQGVPIHDKHIEVIVRQMLRKVT
VVDHGETDLLPGELVDRSRYNELNRAALTEGKKTASARQEVMGITKASLATESWLSAASF
QETTKVLTEAALAGKRDPLLGLKENVIIGKLIPAGTGLARYRDVTVEATEEAKAERYPNR
LFADAGGVDESDLSYLDFDAFTGGELGEEPGQYV
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgcaaccacgttcgatgagctgcggatcggcctcgcaacggccgacgacatc
cgggcatggtcctacggcgaggtgaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacggcctgttcggcgagcagatcttcggccccagccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtc
gaggtcacgaagtcgtccgtgcgccgcgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggtacttcaagggcgtgcccagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcatccgggtcgac
gacgaggctcgccacgagcgcctgccggcgctcgagcaggagctgcgcctcaagatcggc
gagatcgagaagcgccgcgacgcagacatcgccgagcgcctcgcgcagctcgagacggat
gtcgccgagctcgaggaggagggcgcgaaggccgaccagaagcgcaaggtccgcgacgcg
ggcgagcgcgagatggcgcagctgcgcaagatcgccgacgaccagatcgcccacatggag
cgggtcttcgacgacttccgctcgctcaagctcggcgacctgaaggcggaggacgcggtc
taccacgacctcgtcgacctctacggcgagttcttcgagggccacatgggcgccgaggcg
atcaagctgcgcctgctctcgttcgacctcgcggccgagtccgaggacctgcaccagcag
atcgccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagacgggcaacagcccggccgcgatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgacgagcgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgactccgccgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggcggtcgacgcc
ctgttcgacaacggccgccgcggccgccccgtcacgggcaccggcaaccgcgcgctcaag
tcgctctccgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtcatcgtcgtcggcccgcagctgcagctgcaccag
tgcggcctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgggccactcgcagaacatcaagcacgcgaagcgcatggtcgagcggtcgaag
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgc
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgctcctcgtcgagggcaag
gccatccagctgcacccgctcgtctgctcggcgttcaacgccgacttcgacggcgaccag
atggctgtgcacctgccgctctcggtcgaggcgcaggccgaggcccgcgtgctgatgctc
gcgtcgaacaacatcctgaagccgtccgacggccgaccggtgacgctcccgacccacgag
atcgtctcgggcctccaccacctcacgtccgtcaaggcggatgcggtgggcacgggccgc
gcgttctcctcggtcgccgaggccatcatggccatggaccagggcacgctcgacctcaac
gccgtcgtgcgcatccgcctgtcggacctcgtcttccgcgaccaggaccgtccggagggc
ttcgtcgacggtgagccgttcctgctcgagacgaccctcggccgcgcgctcttcaacgag
ctgctgccggcggacttcccgttcgtcgcggaggtcgcggcgaagccggtcatctcgctc
atcgtgaacgcgctcgccgagcgctacccgaagaccgtggtggcggcgacgctcgacaag
atcaaggacgcgggcttccactgggcgacccgctccggcatcacggtcgcgctctccgac
gtcatcacccccgcgcgcaaggacgagatcgtcggcgccgcggaggagtcggcccggaag
atccaggacaagttcgagaagggcctgctgaccgacgccgagcgccgcagcgacctcacc
gagctctggacccgcgccacgaacgacgtgcagaaggccacccaggaggcgttcgacgag
ggcaactccatctaccggatggtgaccgcgggcgcgaacggcaactggatccaggtgcgc
aacatcaccggcatgcgcggtctcgtgacgaacccgaagggcgaggtcatcccgcgcccg
atcatctcctcgtaccgcgaggggctgacggtcgccgagtacttcatcgccacgcacggc
gcgcgcaagggctcggccgacaccgcgctccgcacggccgactcgggctacctcacgcgt
cgcctcgtcgacgtgtcgcaggacgtcatcatccgtgaggacgactgcggcaccgagcgt
ggcctcgacgtgccgatcgccgagacgatcgacgggcagctcgtgctgcacgagaacgtc
gagtccgcggcattcgcccgcaacctcgcggtcgacgtcgtcacctccgacggcacggtg
ctcgccaccggcggctccgacatcggcgaccgcgagatccgcgcgttcatcggcgccggc
gtcgagacggtcaaggtgcgctcggtgctcacgtgcgagtcggcggtcggcgtctgcgcc
cactgctacggccgctcgctcgcgaccggcaagctcgtcgacatcggcgaggcggtcggc
atcatcgccgcccagtcgatcggcgagcccggcacgcagctcacgatgcgcacgttccac
accggtggatcggtcggcgcgagcgacatcacgcagggtctgccccgcgtgacggagctc
ttcgaggcccgcaccccgaagaacgcctcgcccatcgccgaggtcgccggtcgggtgcgc
atcgaggaggacgagaagtcgaagcgcgtcgtcatcacgcccgacaacggcgacgaggag
ctcacctaccaggtgctgcgccgcgcgacgctcgaggtcggggacggcgaccacgtcgag
cagggccagcagctgcaggtcggctcgatcgaccccaaggaggtgctgcgcgtgcgcggc
gtccgcgaggtgcagaagcacctggtctcgggcgtccaggacgtgtaccgctcgcagggc
gtgccgatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgcaaggtcacc
gtcgtcgaccacggcgagaccgacctgctgcccggtgagctcgtcgaccgctcgcggtac
aacgagctcaaccgcgccgcgctgaccgagggcaagaagaccgcctcggcccgccaggag
gtcatgggcatcactaaggcgtcgctcgcgacggagtcgtggctctcggccgcctccttc
caggagacgacgaaggtgctcaccgaggcggcgctcgccggcaagcgcgacccgctgctc
ggcctcaaggagaacgtcatcatcggaaagctcatcccggccggcaccggcctggcgcgc
taccgcgacgtcacggtcgaggccaccgaggaggcgaaggcggagcgctacccgaaccgc
ctgttcgccgacgccggcggcgtcgacgagtccgacctgtcgtacctcgacttcgacgcc
ttcacgggcggcgagctcggcgaggagccgggtcagtacgtctga
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integrated database retrieval system
