Agrococcus sp. Marseille-Q4369: JSQ78_09845
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Entry
JSQ78_09845 CDS
T09684
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agro
Agrococcus sp. Marseille-Q4369
Pathway
agro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JSQ78_09845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agro03400
]
JSQ78_09845
Enzymes [BR:
agro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JSQ78_09845
DNA repair and recombination proteins [BR:
agro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JSQ78_09845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QUW20176
LinkDB
All DBs
Position
complement(1958956..1961418)
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AA seq
820 aa
AA seq
DB search
MVVGGRSLRFSNPDKVLYPSTGTTKRDVLEYVLRASEPIIAHAGGRPVTRKRWTEGVGTE
KKPGQVFFQKTLEKGAPEWVQTVELQHSTGPKQYPVLTEPAVLAWMAQMGALELHVPQWR
MLDGDRQNPDRLVLDLDPGPGADLDDCARVALWVRELLEDIGLHPVPLTSGSKGIHLYAR
LDGTVTSEQASEVAHTLARSLEQMHPELIVSDMKKALRTNKVLLDWSQNSGSKTTVAPYS
LRGRLRPTVAAPRTWDEIEAGGLEQLEYTEVLERLERDGDLIASLDPPPDRLAKYRGMRS
AARTPEPVPAEPPTSTDGRSFVIQKHRASRLHYDFRLEQDGVLVSWAVPKGLPSTPKQNR
LGVQTEDHPLEYGSFEGTIPKGEYGAGVVEIWDAGTYELEKWRDDEVIATLHGRPDGGLG
GEPYRFALIRTDAEKRQWLVHRMKEQDAERDARLKGYAPSKAAAARAARGEGDDEAPAAP
AAAPKRRLGKRLGGATARDKGDRPTDLRPMLATQSDASAIDDEREWSFEVKWDGWRVLVE
RRGDAVRLLSRNGRDLSGAFPELVEAVPAAIEADAVLDGEVVMLKRGVADFEALQDRGGL
SGRQAARAAKASPATLVLFDLLEEDGERLVDERLDDRQSRLDELVHESRRVKVSKPLRGS
LARILEVTRERGLEGVMAKRHDSRYRPGKRSDDWRKLKHQQSQEVVVVGWLEGNGSLSGT
VGSLVLALPGEGGRMRYAGRVGTGLSSKERDRLRDELRPRRTAPALEGLPSDVARKVRWV
RAAVAEVEHTEQTTSGALRHPVWKGLRPDKALADLNPTAG
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atcgtcgtcggcgggcggtcgctgcgcttctcgaaccccgacaaggtgctgtacccgtcg
accgggacgacgaagcgcgacgtgctcgagtacgtgctgcgcgcatccgagcccatcatc
gcccacgcgggcggccgccccgtcacgcgcaagcgctggaccgagggcgtcggcaccgag
aagaagccggggcaggtgttcttccagaagacgctcgagaagggcgcgcccgagtgggtg
cagaccgtcgagctgcagcactcgacggggccgaagcagtaccccgtgctgaccgagccc
gcggtgctcgcgtggatggcgcagatgggggcgctcgagctgcacgtgccgcagtggcgg
atgctcgacggcgaccgccagaacccggaccggctcgtgctcgacctcgacccggggccc
ggcgccgacctggacgactgcgcgcgcgtcgcgctgtgggtgcgcgagctgctcgaggac
atcggcctgcaccccgtgccgctcacgagcgggtcgaagggcatccacctctacgcgcgg
ctcgacggcaccgtcacgagcgagcaggcgagcgaggtcgcgcacacgctcgcgcgatcg
ctcgagcagatgcatccggagctcatcgtgagcgacatgaagaaggcgctgcgcacgaac
aaggtgctgctcgactggagccagaactccggctcgaagacgaccgtcgcgccctactcg
ctgcgcgggcggctgcggccgaccgtcgccgcgccgcgcacgtgggacgagatcgaggcc
ggcgggctcgagcagctcgagtacaccgaggtgctcgagcggctcgagcgcgacggcgac
ctcatcgcctcgctcgacccgccgcccgaccggctcgcgaagtaccgcggcatgcgctcg
gccgcgcgcacgcccgagcccgtgccggccgagccgccgacgtcgaccgacggccgctcg
ttcgtcatccagaagcaccgggcgagccggctgcactacgacttccggctcgagcaggac
ggcgtgctcgtctcgtgggcggtgccgaaggggctgccgtcgacgccgaagcagaaccgg
ctcggcgtgcagaccgaggaccacccgctcgagtacggctcgttcgagggcacgatcccg
aagggcgagtacggcgcgggcgtcgtcgagatctgggacgcgggcacgtacgagctcgag
aagtggcgcgacgacgaggtgatcgcgacgctccacgggcggcccgacggtgggctcggc
ggggagccgtaccgcttcgcgctcatccgcaccgacgccgagaagcggcagtggctcgtg
caccgcatgaaggagcaggacgccgagcgcgacgcgcggctcaagggctacgcgccctcg
aaggctgccgccgcgcgggcggcgcggggcgagggcgacgacgaggcaccggccgcgccc
gcggcggcgccgaagcggcggctcggcaagcggctcggcggcgccaccgcccgcgacaag
ggcgaccgcccgaccgacctccgcccgatgctcgcgacgcagagcgacgcatccgcgatc
gacgacgagcgcgagtggtcgttcgaggtgaagtgggacggctggcgcgtgctcgtcgag
cgccgtggcgacgcggtgcggctgctgagccgcaacggccgcgacctctctggcgcgttc
cccgagctcgtcgaggcggtgccggccgcgatcgaggcggacgccgtgctcgacggcgaa
gtggtgatgctgaagcgcggggtcgcagacttcgaggcgctgcaggatcgcggcgggctc
tcagggcgccaggcggcgcgggcggcgaaggcgagcccggcgacgctcgtgctgttcgac
ctgctcgaggaggacggcgagcggctcgtcgacgagcgcctcgacgaccggcagtcgcgg
ctcgacgagctcgtgcacgagagccggcgagtgaaggtctcgaagccgctccgcggctcg
ctcgcgcgcatcctcgaggtcacgcgggagcgcggcctcgagggcgtcatggcgaagcgg
cacgacagccgctaccggcccggcaagcgcagcgacgactggcgcaagctcaagcaccag
cagtcgcaggaggtcgtcgtggtcggctggctcgagggcaacgggtcgctctcgggcacg
gtcggctcgctcgtgctcgcgctccccggagaaggcgggcggatgcgctacgccggccgg
gtgggcacgggcctctcgagcaaggagcgcgaccgcttgcgcgacgagctgcgcccgcgg
cggacggcgccggcgctcgaggggctcccgagcgacgtcgcgcggaaggtgcggtgggtg
cgcgcagcggtcgccgaggtcgagcacacggagcagacgacgtcgggcgcgctgcggcac
ccggtgtggaaggggctgcggccggacaaggcgctcgccgacctgaatcccaccgctggc
tga
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